C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lymphocyte cytosolic protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002699 Lcp2 10090 + 11:34046920-34092295 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052413 Lcp2-001 34046920-34092295 protein_coding
  ENSMUST00000109329 Lcp2-002 34047168-34090224 protein_coding
  ENSMUST00000133120 Lcp2-003 34078177-34078592 processed_transcript
  ENSMUST00000146318 Lcp2-004 34087004-34090753 processed_transcript
  ENSMUST00000169878 Lcp2-201 34047201-34092280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052413ENSMUST00000109329ENSMUST00000146318ENSMUST00000169878
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052413 N/A 0.780±0.21 N/A N/A N/A 0.138±0.00 N/A 0.243±0.15 0.128±0.00 0.417±0.00 0.050±0.01 0.599±0.34 N/A N/A
ENSMUST00000109329 0.988±0.60 N/A 0.643±0.00 0.270±0.08 1.560±0.46 0.713±0.30 0.152±0.03 0.356±0.20 1.648±1.22 1.785±0.64 0.060±0.02 0.461±0.15 0.209±0.01 N/A
ENSMUST00000146318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A
ENSMUST00000169878 1.333±0.44 0.363±0.15 1.000±0.00 0.294±0.09 3.813±1.96 0.492±0.12 0.230±0.11 0.406±0.20 2.455±1.73 1.768±0.32 0.166±0.22 0.863±0.67 0.408±0.06 0.673±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OK CIL_0004OK_0002 CGP 11:34046920-34208089

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005829 TAS cytosol
GO:0005911 IDA cell-cell junction
GO:0045576 IMP mast cell activation
GO:0050663 IMP cytokine secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036215 lcp2b lymphocyte cytosolic protein 2b protein_coding Danio_rerio
ENSDARG00000055955 lcp2a lymphocyte cytosolic protein 2a protein_coding Danio_rerio
ENSG00000043462 LCP2 lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) protein_coding Homo_sapiens

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