C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lin-7 homolog B (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003872 Lin7b 10090 - 7:45367891-45370583 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003971 Lin7b-001 45367891-45370583 protein_coding
  ENSMUST00000124128 Lin7b-005 45367893-45368602 retained_intron
  ENSMUST00000131333 Lin7b-004 45369264-45370185 retained_intron
  ENSMUST00000147787 Lin7b-002 45369563-45370346 retained_intron
  ENSMUST00000156528 Lin7b-003 45369210-45370315 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003971ENSMUST00000124128ENSMUST00000131333ENSMUST00000147787ENSMUST00000156528
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003971 3.547±2.18 2.215±0.79 4.750±0.10 28.611±25.01 0.704±0.35 1.712±1.03 0.667±0.45 0.757±0.40 0.053±0.02 0.262±0.10 0.217±0.15 8.250±3.43 0.414±0.30 0.998±0.16
ENSMUST00000124128 N/A N/A N/A 38.665±35.85 0.709±0.00 3.110±0.58 0.227±0.00 1.187±0.34 0.167±0.02 0.402±0.25 0.467±0.00 8.527±0.00 0.622±0.35 1.051±0.00
ENSMUST00000131333 0.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.05 0.136±0.00 N/A N/A N/A
ENSMUST00000147787 N/A N/A N/A N/A 0.244±0.03 0.723±0.06 0.114±0.00 N/A N/A 0.190±0.00 0.097±0.00 2.477±0.08 0.117±0.00 N/A
ENSMUST00000156528 0.729±0.00 8.476±6.77 N/A N/A 1.040±0.00 0.850±0.00 0.782±0.00 N/A 0.094±0.00 0.312±0.02 0.316±0.04 7.037±2.24 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0005923 IEA tight junction
GO:0006887 IEA exocytosis
GO:0007269 IGI neurotransmitter secretion
GO:0015031 IEA protein transport
GO:0019904 IEA protein domain specific binding
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037932 lin7b lin-7 homolog B (C. elegans) protein_coding Danio_rerio
ENSG00000104863 LIN7B lin-7 homolog B (C. elegans) protein_coding Homo_sapiens

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