C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-7 homolog B (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003971 Lin7b-001 ENSMUSG00000003872 10090 - 7:45367891-45370583 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003971
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003971 3.547±2.18 2.215±0.79 4.750±0.10 28.611±25.01 0.704±0.35 1.712±1.03 0.667±0.45 0.757±0.40 0.053±0.02 0.262±0.10 0.217±0.15 8.250±3.43 0.414±0.30 0.998±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0005923 IEA tight junction
GO:0006887 IEA exocytosis
GO:0007269 IGI neurotransmitter secretion
GO:0015031 IEA protein transport
GO:0019904 IEA protein domain specific binding
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221459 LIN7B-001 protein_coding Homo_sapiens 0 765
ENST00000391864 LIN7B-002 protein_coding Homo_sapiens 0 302
ENST00000486217 LIN7B-006 protein_coding Homo_sapiens 0 272
ENST00000595200 LIN7B-007 nonsense_mediated_decay Homo_sapiens 0 292

Loading