C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lin-7 homolog B (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104863 LIN7B 9606 + 19:49114324-49118460 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221459 LIN7B-001 49114361-49118460 protein_coding
  ENST00000391864 LIN7B-002 49114324-49118460 protein_coding
  ENST00000465141 LIN7B-005 49116118-49117995 retained_intron
  ENST00000469137 LIN7B-003 49114466-49118460 retained_intron
  ENST00000474252 LIN7B-004 49115226-49118059 retained_intron
  ENST00000486217 LIN7B-006 49114424-49115489 protein_coding
  ENST00000595200 LIN7B-007 49114409-49118015 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221459ENST00000391864ENST00000465141ENST00000469137ENST00000474252ENST00000486217ENST00000595200
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221459 1.403±0.00 N/A N/A 3.945±1.16 3.690±0.00 0.869±0.34 3.349±2.83 1.037±0.00 N/A 1.306±0.00 12.788±0.00 3.821±3.22 N/A 17.873±0.00
ENST00000391864 N/A 1.789±0.00 N/A 18.335±0.00 0.340±0.00 N/A 3.243±0.00 1.787±0.00 0.789±0.00 0.225±0.00 N/A N/A N/A N/A
ENST00000465141 N/A 0.598±0.00 2.091±0.00 3.013±0.00 0.572±0.00 N/A N/A 1.467±0.00 N/A N/A N/A 1.794±0.00 1.969±0.00 11.672±0.00
ENST00000469137 N/A 0.601±0.00 N/A N/A N/A 0.424±0.00 N/A N/A N/A N/A N/A 0.682±0.00 0.489±0.15 4.663±2.37
ENST00000474252 N/A N/A N/A N/A N/A 0.669±0.00 N/A N/A 1.269±0.00 0.271±0.00 N/A 2.142±0.00 2.091±0.00 N/A
ENST00000486217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.246±0.00 N/A N/A
ENST00000595200 N/A 0.706±0.00 N/A N/A N/A N/A N/A N/A 0.047±0.00 1.715±0.00 N/A 0.324±0.00 0.301±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AS CIL_0003AS_0002 CGP 19:49085419-49118460

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0005923 IEA tight junction
GO:0006887 IEA exocytosis
GO:0007269 IEA neurotransmitter secretion
GO:0015031 IEA protein transport
GO:0019904 IPI protein domain specific binding
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037932 lin7b lin-7 homolog B (C. elegans) protein_coding Danio_rerio
ENSMUSG00000003872 Lin7b lin-7 homolog B (C. elegans) protein_coding Mus_musculus

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