C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: atrophin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004263 Atn1 10090 - 6:124739189-124756524 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000088357 Atn1-001 124742544-124756524 protein_coding
  ENSMUST00000129411 Atn1-003 124739189-124756021 nonsense_mediated_decay
  ENSMUST00000133577 Atn1-004 124745172-124745625 processed_transcript
  ENSMUST00000146872 Atn1-002 124747719-124756054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088357ENSMUST00000129411ENSMUST00000146872
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088357 13.119±5.38 14.034±4.24 11.047±4.21 30.114±16.00 9.896±4.35 17.561±1.22 8.052±1.64 13.902±4.52 2.906±0.55 17.085±1.28 8.975±2.35 13.887±2.40 4.417±1.78 3.855±1.98
ENSMUST00000129411 N/A 6.645±3.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146872 N/A N/A N/A 72.718±0.00 N/A N/A N/A N/A N/A N/A N/A 53.123±0.00 14.841±0.63 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IGI transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0009404 IDA toxin metabolic process
GO:0016363 IEA nuclear matrix
GO:0016477 IDA cell migration
GO:0019904 IEA protein domain specific binding
GO:0030011 IDA maintenance of cell polarity
GO:0030054 IEA cell junction
GO:0050827 IDA toxin receptor binding
GO:0051402 IEA neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000111676 ATN1 atrophin 1 protein_coding Homo_sapiens

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