C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: atrophin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129411 Atn1-003 ENSMUSG00000004263 10090 - 6:124739189-124756021 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalENSMUST00000129411
Transcript ID Adrenal
ENSMUST00000129411 6.645±3.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IGI transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0009404 IDA toxin metabolic process
GO:0016477 IDA cell migration
GO:0030011 IDA maintenance of cell polarity
GO:0030054 IEA cell junction
GO:0050827 IDA toxin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229281 C12orf57-001 protein_coding Homo_sapiens 0 433
ENST00000356654 ATN1-002 protein_coding Homo_sapiens 0 2719
ENST00000396684 ATN1-001 protein_coding Homo_sapiens 0 2719
ENST00000421884 RP11-382D8.5-001 processed_pseudogene Homo_sapiens 7e-36 156
ENST00000537488 ATN1-005 retained_intron Homo_sapiens 0 616
ENST00000538392 C12orf57-002 retained_intron Homo_sapiens 0 228
ENST00000540506 C12orf57-005 protein_coding Homo_sapiens 0 435
ENST00000541029 ATN1-004 retained_intron Homo_sapiens 0 981
ENST00000542222 C12orf57-007 processed_transcript Homo_sapiens 0 431
ENST00000544681 C12orf57-004 protein_coding Homo_sapiens 0 230
ENST00000545581 C12orf57-003 protein_coding Homo_sapiens 0 414

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