C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: atrophin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088357 Atn1-001 ENSMUSG00000004263 10090 - 6:124742544-124756524 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088357
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088357 13.119±5.38 14.034±4.24 11.047±4.21 30.114±16.00 9.896±4.35 17.561±1.22 8.052±1.64 13.902±4.52 2.906±0.55 17.085±1.28 8.975±2.35 13.887±2.40 4.417±1.78 3.855±1.98

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IGI transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0009404 IDA toxin metabolic process
GO:0016363 IEA nuclear matrix
GO:0016477 IDA cell migration
GO:0019904 IEA protein domain specific binding
GO:0030011 IDA maintenance of cell polarity
GO:0030054 IEA cell junction
GO:0050827 IDA toxin receptor binding
GO:0051402 IEA neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356654 ATN1-002 protein_coding Homo_sapiens 0 3051
ENST00000396684 ATN1-001 protein_coding Homo_sapiens 0 2972
ENST00000421884 RP11-382D8.5-001 processed_pseudogene Homo_sapiens 7e-36 156
ENST00000537488 ATN1-005 retained_intron Homo_sapiens 0 616
ENST00000541029 ATN1-004 retained_intron Homo_sapiens 0 981

Loading