C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chloride channel 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004317 Clcn5 10090 - X:7153810-7319358 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004428 Clcn5-001 7153810-7188714 protein_coding
  ENSMUST00000115746 Clcn5-004 7159469-7319233 protein_coding
  ENSMUST00000128319 Clcn5-003 7171199-7319358 protein_coding
  ENSMUST00000132126 Clcn5-005 7212991-7319170 processed_transcript
  ENSMUST00000154382 Clcn5-002 7160177-7188673 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004428ENSMUST00000115746ENSMUST00000128319
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004428 2.483±1.12 1.460±0.50 2.568±0.00 2.614±1.39 1.453±0.43 2.199±0.56 0.231±0.12 11.551±1.35 0.955±0.56 0.787±0.37 0.209±0.07 4.498±1.58 4.591±3.62 0.723±0.51
ENSMUST00000115746 N/A N/A N/A 0.519±0.00 N/A N/A N/A N/A 0.212±0.00 N/A N/A N/A N/A 0.162±0.00
ENSMUST00000128319 N/A N/A N/A N/A N/A N/A N/A N/A 0.463±0.00 N/A N/A N/A N/A 0.278±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005524 IEA ATP binding
GO:0005765 IEA lysosomal membrane
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006821 IEA chloride transport
GO:0006897 IMP endocytosis
GO:0015297 IEA antiporter activity
GO:0016021 IEA integral component of membrane
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 IEA ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0045177 IDA apical part of cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019693 CLCN5 (1 of 2) chloride channel, voltage-sensitive 5 protein_coding Danio_rerio
ENSDARG00000022466 clcn5 chloride channel 5 protein_coding Danio_rerio
ENSG00000171365 CLCN5 chloride channel, voltage-sensitive 5 protein_coding Homo_sapiens

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