C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004428 Clcn5-001 ENSMUSG00000004317 10090 - X:7153810-7188714 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004428 2.483±1.12 1.460±0.50 2.568±0.00 2.614±1.39 1.453±0.43 2.199±0.56 0.231±0.12 11.551±1.35 0.955±0.56 0.787±0.37 0.209±0.07 4.498±1.58 4.591±3.62 0.723±0.51

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006897 IMP endocytosis
GO:0015297 IEA antiporter activity
GO:0016021 IEA integral component of membrane
GO:0034220 IEA ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0045177 IDA apical part of cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000029725 clcn5-201 protein_coding Danio_rerio 0 424
ENSDART00000148502 clcn5-001 protein_coding Danio_rerio 0 424
ENST00000307367 CLCN5-003 protein_coding Homo_sapiens 0 3627
ENST00000313143 DVL3-001 protein_coding Homo_sapiens 0.0001 55
ENST00000325192 C14orf28-001 protein_coding Homo_sapiens 0.00005 55
ENST00000341322 BRWD1-004 protein_coding Homo_sapiens 0.0000000001 73
ENST00000376088 CLCN5-001 protein_coding Homo_sapiens 0 4087
ENST00000376091 CLCN5-002 protein_coding Homo_sapiens 0 3422
ENST00000376108 CLCN5-004 protein_coding Homo_sapiens 0 3567
ENST00000380829 CLCN4-003 protein_coding Homo_sapiens 0 453
ENST00000380833 CLCN4-001 protein_coding Homo_sapiens 0 771
ENST00000381998 MSR1-003 protein_coding Homo_sapiens 0.0002 53
ENST00000421085 CLCN4-201 protein_coding Homo_sapiens 0 771
ENST00000526744 GPR61-006 processed_transcript Homo_sapiens 0.00001 55
ENST00000527748 GPR61-005 protein_coding Homo_sapiens 0.00009 55
ENST00000555826 C14orf28-002 retained_intron Homo_sapiens 0.00006 55

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