C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004626 Stxbp2 10090 + 8:3630955-3643644 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004745 Stxbp2-002 3631170-3642795 protein_coding
  ENSMUST00000159370 Stxbp2-012 3639574-3642794 processed_transcript
  ENSMUST00000159652 Stxbp2-013 3640707-3641937 retained_intron
  ENSMUST00000159888 Stxbp2-005 3631153-3635639 processed_transcript
  ENSMUST00000159911 Stxbp2-004 3631153-3633924 processed_transcript
  ENSMUST00000160435 Stxbp2-011 3637166-3641004 processed_transcript
  ENSMUST00000160708 Stxbp2-001 3630955-3643644 protein_coding
  ENSMUST00000161629 Stxbp2-015 3640837-3642788 retained_intron
  ENSMUST00000161982 Stxbp2-008 3632915-3634066 retained_intron
  ENSMUST00000162047 Stxbp2-014 3640764-3642022 retained_intron
  ENSMUST00000162737 Stxbp2-006 3631157-3634735 retained_intron
  ENSMUST00000162832 Stxbp2-009 3641612-3642795 retained_intron
  ENSMUST00000162867 Stxbp2-003 3631152-3635494 processed_transcript
  ENSMUST00000162974 Stxbp2-010 3635416-3635719 retained_intron
  ENSMUST00000163044 Stxbp2-007 3631165-3635742 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004745ENSMUST00000159652ENSMUST00000159888ENSMUST00000160708ENSMUST00000161629ENSMUST00000162047ENSMUST00000162737
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004745 17.139±1.72 22.086±5.40 32.821±5.16 14.678±5.38 12.827±5.71 48.410±3.18 1.541±0.47 29.764±9.83 19.800±7.45 22.337±2.24 1.182±0.45 26.799±7.23 52.364±12.45 23.963±11.29
ENSMUST00000159652 N/A N/A N/A 28.614±7.20 N/A N/A N/A N/A N/A N/A N/A 55.748±11.14 N/A N/A
ENSMUST00000159888 N/A 19.340±0.45 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160708 4.069±0.39 5.457±0.53 8.819±1.46 N/A 5.677±0.42 10.056±1.69 0.371±0.05 9.474±1.09 5.316±2.47 9.301±1.23 0.305±0.01 7.554±1.61 9.080±2.84 5.104±0.64
ENSMUST00000161629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.221±0.00 N/A N/A N/A
ENSMUST00000162047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.752±0.00 N/A N/A N/A
ENSMUST00000162737 N/A N/A N/A N/A 14.222±1.21 N/A 1.471±0.04 N/A N/A N/A N/A 28.308±0.01 25.008±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010X CIL_00010X_0002 CGP 8:3623371-3643644
CIL_00035H CIL_00035H_0002 CGP 8:3630955-3660110

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006887 IMP exocytosis
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0015031 IEA protein transport
GO:0016324 IDA apical plasma membrane
GO:0017075 IPI syntaxin-1 binding
GO:0019905 TAS syntaxin binding
GO:0030348 IPI syntaxin-3 binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007603 stxbp2 syntaxin binding protein 2 protein_coding Danio_rerio
ENSG00000076944 STXBP2 syntaxin binding protein 2 protein_coding Homo_sapiens

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