C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cellular retinoic acid binding protein II
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004885 Crabp2 10090 + 3:87948666-87953376 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005019 Crabp2-001 87948666-87953376 protein_coding
  ENSMUST00000163040 Crabp2-002 87952144-87952985 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005019ENSMUST00000163040
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005019 2.061±0.41 0.374±0.12 0.383±0.24 6.600±3.74 1.697±0.58 0.078±0.04 0.508±0.11 0.242±0.28 8.451±0.36 0.111±0.07 11.683±3.65 6.205±4.27 0.522±0.46
ENSMUST00000163040 N/A N/A N/A 0.425±0.00 N/A 0.048±0.00 N/A N/A N/A 0.105±0.00 N/A N/A 0.203±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001972 IDA retinoic acid binding
GO:0005215 IEA transporter activity
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0006810 IEA transport
GO:0016918 IEA retinal binding
GO:0019841 IEA retinol binding
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0042573 IDA retinoic acid metabolic process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030449 crabp2b cellular retinoic acid binding protein 2, b protein_coding Danio_rerio
ENSDARG00000040923 crabp2a cellular retinoic acid binding protein 2, a protein_coding Danio_rerio
ENSDARG00000073978 crabp2a cellular retinoic acid binding protein 2, a protein_coding Danio_rerio
ENSG00000143320 CRABP2 cellular retinoic acid binding protein 2 protein_coding Homo_sapiens

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