C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cellular retinoic acid binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143320 CRABP2 9606 - 1:156699606-156705816 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368220 CRABP2-002 156700875-156705816 protein_coding
  ENST00000368221 CRABP2-003 156699756-156705747 protein_coding
  ENST00000368222 CRABP2-001 156699606-156705601 protein_coding
  ENST00000621784 CRABP2-201 156699618-156705816 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368220ENST00000368221ENST00000368222ENST00000621784
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368220 N/A N/A 0.375±0.00 N/A N/A 3.000±0.00 0.127±0.00 N/A 10.382±0.00 1.854±0.62 N/A 6.892±0.00 N/A N/A
ENST00000368221 2.783±0.00 1.950±0.00 N/A 5.113±0.00 25.283±18.36 3.100±0.00 0.161±0.06 3.944±0.00 1.268±1.14 5.685±0.00 N/A 18.998±13.06 44.304±0.00 4.205±1.78
ENST00000368222 0.540±0.00 0.397±0.00 N/A 3.667±0.00 20.442±0.00 0.920±0.27 0.198±0.00 1.026±0.00 1.444±0.00 N/A 0.780±0.66 12.726±9.12 33.910±18.54 1.656±0.00
ENST00000621784 N/A 1.258±0.00 N/A 0.685±0.00 N/A N/A 0.185±0.00 0.179±0.00 N/A N/A N/A 6.904±0.47 12.906±0.00 1.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001972 IEA retinoic acid binding
GO:0005215 IEA transporter activity
GO:0005501 TAS retinoid binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0007165 TAS signal transduction
GO:0008544 TAS epidermis development
GO:0016918 IEA retinal binding
GO:0019841 IEA retinol binding
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0042573 IEA retinoic acid metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030449 crabp2b cellular retinoic acid binding protein 2, b protein_coding Danio_rerio
ENSDARG00000040923 crabp2a cellular retinoic acid binding protein 2, a protein_coding Danio_rerio
ENSDARG00000073978 crabp2a cellular retinoic acid binding protein 2, a protein_coding Danio_rerio
ENSMUSG00000004885 Crabp2 cellular retinoic acid binding protein II protein_coding Mus_musculus

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