C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SUMO/sentrin specific peptidase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005204 Senp3 10090 - 11:69673115-69682084 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005336 Senp3-001 69673115-69681846 protein_coding
  ENSMUST00000066760 Senp3-002 69673121-69682084 protein_coding
  ENSMUST00000123084 Senp3-008 69673116-69674976 retained_intron
  ENSMUST00000128355 Senp3-004 69678157-69679195 retained_intron
  ENSMUST00000130440 Senp3-006 69677048-69678013 retained_intron
  ENSMUST00000134942 Senp3-003 69673341-69678687 protein_coding
  ENSMUST00000135372 Senp3-007 69674233-69676947 processed_transcript
  ENSMUST00000142206 Senp3-009 69673953-69674443 retained_intron
  ENSMUST00000153516 Senp3-005 69673275-69678119 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005336ENSMUST00000066760ENSMUST00000123084ENSMUST00000128355ENSMUST00000134942ENSMUST00000153516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005336 19.502±3.82 15.297±3.53 20.511±3.23 17.862±8.65 15.306±2.42 14.521±2.13 7.187±0.25 11.836±1.35 12.625±7.13 17.609±1.59 12.134±0.78 14.566±3.70 34.622±18.25 15.020±6.56
ENSMUST00000066760 N/A 6.792±0.00 N/A N/A 4.508±0.00 N/A N/A N/A N/A N/A N/A 8.160±3.28 N/A 5.747±0.39
ENSMUST00000123084 N/A N/A 12.137±2.68 15.659±5.96 6.874±0.30 N/A N/A N/A N/A N/A N/A 7.681±0.00 N/A N/A
ENSMUST00000128355 30.544±0.10 N/A N/A 36.056±0.00 14.981±0.00 N/A 8.891±0.00 N/A N/A 21.038±0.00 N/A 32.200±12.00 87.421±27.08 41.636±0.00
ENSMUST00000134942 N/A N/A N/A N/A 11.522±0.00 N/A N/A 13.561±0.00 N/A N/A N/A 20.492±3.41 46.506±0.00 N/A
ENSMUST00000153516 N/A N/A N/A 12.997±0.00 16.721±0.00 N/A 6.672±0.81 7.793±0.00 13.823±3.14 N/A N/A 19.152±1.71 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006508 IEA proteolysis
GO:0019538 IDA protein metabolic process
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056741 senp3b SUMO1/sentrin/SMT3 specific peptidase 3b protein_coding Danio_rerio
ENSDARG00000092115 eif4a1a eukaryotic translation initiation factor 4A, isoform 1A protein_coding Danio_rerio
ENSDARG00000095538 senp3a SUMO1/sentrin/SMT3 specific peptidase 3a protein_coding Danio_rerio
ENSG00000161956 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 protein_coding Homo_sapiens
ENSG00000277957 SENP3-EIF4A1 SENP3-EIF4A1 readthrough (NMD candidate) protein_coding Homo_sapiens

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