C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA C330007P06 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006423 C330007P06Rik 10090 - X:36823737-36874111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047486 C330007P06Rik-001 36848550-36874111 protein_coding
  ENSMUST00000115248 C330007P06Rik-201 36848543-36864246 protein_coding
  ENSMUST00000115249 C330007P06Rik-002 36823737-36864238 protein_coding
  ENSMUST00000127966 C330007P06Rik-005 36839658-36857012 retained_intron
  ENSMUST00000143544 C330007P06Rik-003 36851135-36864173 processed_transcript
  ENSMUST00000150873 C330007P06Rik-004 36856481-36864155 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047486ENSMUST00000115248ENSMUST00000115249ENSMUST00000127966ENSMUST00000143544ENSMUST00000150873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.563±0.25
ENSMUST00000115248 8.089±1.50 4.895±1.63 8.403±0.41 4.219±0.53 6.222±1.25 2.261±0.68 3.169±0.46 5.585±1.34 5.635±1.10 8.596±2.06 3.498±0.52 4.186±3.16 5.781±2.39 0.847±0.57
ENSMUST00000115249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.824±0.00
ENSMUST00000127966 0.873±0.00 1.836±0.00 N/A 0.697±0.00 0.632±0.00 0.551±0.11 N/A N/A N/A 0.858±0.00 N/A 0.981±0.17 N/A N/A
ENSMUST00000143544 13.069±2.65 N/A N/A N/A 8.457±2.98 6.911±3.18 3.782±0.38 8.189±0.61 4.589±0.48 9.790±2.11 N/A 7.271±1.85 N/A N/A
ENSMUST00000150873 N/A 5.836±1.11 N/A N/A N/A 7.656±0.00 N/A N/A 5.863±0.00 N/A N/A 9.376±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UI CIL_0001UI_0002 CGP X:36795651-36874111
CIL_0004S7 CIL_0004S7_0002 CGP X:36823737-36884215

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067981 C5HXorf56 chromosome X open reading frame 56 protein_coding Danio_rerio
ENSG00000018610 CXorf56 chromosome X open reading frame 56 protein_coding Homo_sapiens

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