C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spermidine synthase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006442 Srm 10090 + 4:148591503-148594993 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006611 Srm-001 148591503-148594619 protein_coding
  ENSMUST00000140129 Srm-003 148593894-148594993 processed_transcript
  ENSMUST00000152701 Srm-002 148591918-148594199 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006611ENSMUST00000152701
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006611 40.591±11.81 55.518±5.31 21.945±1.43 31.197±12.12 29.804±13.28 25.534±3.50 7.259±1.59 13.698±1.23 43.235±34.37 15.602±2.15 3.835±0.65 61.303±26.22 31.990±22.37 3.956±1.81
ENSMUST00000152701 N/A N/A N/A N/A 3.195±0.00 N/A N/A N/A N/A N/A 0.718±0.00 5.169±0.00 N/A 0.871±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JY CIL_0008JY_0002 VISTA 4:148408124-149009196
CIL_0008JG CIL_0008JG_0002 VISTA 4:148444314-149044861
CIL_0008RU CIL_0008RU_0002 VISTA 4:148508781-149109416
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332
CIL_00082Y CIL_00082Y_0002 VISTA 4:148576108-149176659

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004766 ISS spermidine synthase activity
GO:0008295 ISS spermidine biosynthetic process
GO:0042803 IEA protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055760 srm spermidine synthase protein_coding Danio_rerio
ENSG00000116649 SRM spermidine synthase protein_coding Homo_sapiens

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