C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermidine synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006611 Srm-001 ENSMUSG00000006442 10090 + 4:148591503-148594619 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006611
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006611 40.591±11.81 55.518±5.31 21.945±1.43 31.197±12.12 29.804±13.28 25.534±3.50 7.259±1.59 13.698±1.23 43.235±34.37 15.602±2.15 3.835±0.65 61.303±26.22 31.990±22.37 3.956±1.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JY CIL_0008JY_0002 VISTA 4:148408124-149009196
CIL_0008JG CIL_0008JG_0002 VISTA 4:148444314-149044861
CIL_0008RU CIL_0008RU_0002 VISTA 4:148508781-149109416
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332
CIL_00082Y CIL_00082Y_0002 VISTA 4:148576108-149176659

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004766 ISS spermidine synthase activity
GO:0008295 ISS spermidine biosynthetic process
GO:0042803 IEA protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000376957 SRM-001 protein_coding Homo_sapiens 0 1205
ENST00000411629 AC108059.4-001 processed_pseudogene Homo_sapiens 0 440
ENST00000459997 SRM-005 nonsense_mediated_decay Homo_sapiens 0 569
ENST00000465788 SRM-006 protein_coding Homo_sapiens 0 289
ENST00000487300 SRM-007 protein_coding Homo_sapiens 0 350

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