C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein H1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000007850 Hnrnph1 10090 + 11:50376990-50386528 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069304 Hnrnph1-201 50377719-50386527 protein_coding
  ENSMUST00000077817 Hnrnph1-006 50377769-50386528 protein_coding
  ENSMUST00000109142 Hnrnph1-005 50376990-50386528 protein_coding
  ENSMUST00000123371 Hnrnph1-008 50377769-50385921 processed_transcript
  ENSMUST00000126737 Hnrnph1-007 50377751-50386528 processed_transcript
  ENSMUST00000127964 Hnrnph1-010 50377765-50382606 processed_transcript
  ENSMUST00000128220 Hnrnph1-015 50378291-50380190 processed_transcript
  ENSMUST00000129631 Hnrnph1-012 50378291-50380970 processed_transcript
  ENSMUST00000132715 Hnrnph1-016 50383087-50384033 processed_transcript
  ENSMUST00000133435 Hnrnph1-013 50378291-50382137 processed_transcript
  ENSMUST00000134230 Hnrnph1-009 50378301-50385923 processed_transcript
  ENSMUST00000140056 Hnrnph1-003 50383831-50386389 processed_transcript
  ENSMUST00000141668 Hnrnph1-014 50382947-50384260 processed_transcript
  ENSMUST00000143301 Hnrnph1-002 50383812-50384693 processed_transcript
  ENSMUST00000150153 Hnrnph1-011 50377769-50383192 processed_transcript
  ENSMUST00000150657 Hnrnph1-001 50383242-50383920 processed_transcript
  ENSMUST00000151537 Hnrnph1-004 50384963-50386225 processed_transcript
  ENSMUST00000156642 Hnrnph1-017 50383179-50386321 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069304ENSMUST00000077817ENSMUST00000109142ENSMUST00000123371ENSMUST00000126737ENSMUST00000134230ENSMUST00000140056ENSMUST00000150153ENSMUST00000156642
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069304 20.968±9.94 10.233±2.31 47.940±2.84 112.228±3.08 11.201±1.99 9.365±0.72 17.044±0.39 14.405±4.33 41.510±39.03 21.779±8.70 27.291±3.15 11.822±1.60 59.674±1.84 27.895±4.80
ENSMUST00000077817 13.304±0.00 N/A N/A 47.192±8.96 N/A 4.988±0.00 N/A 7.679±1.04 21.278±12.60 12.413±0.00 N/A 28.290±39.39 82.570±78.79 N/A
ENSMUST00000109142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.718±2.65
ENSMUST00000123371 19.067±10.11 8.526±2.34 29.945±0.55 35.013±18.81 10.726±2.55 8.308±1.60 7.161±1.52 9.228±2.46 18.168±12.40 27.269±6.84 5.461±1.82 18.258±10.40 26.495±7.05 18.704±1.40
ENSMUST00000126737 N/A 5.817±0.00 N/A N/A N/A 4.555±0.24 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134230 N/A N/A N/A 54.686±0.00 N/A N/A N/A N/A N/A N/A N/A 34.382±39.22 87.331±51.43 123.601±0.00
ENSMUST00000140056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 108.989±2.50 111.085±0.00 N/A
ENSMUST00000150153 N/A N/A N/A N/A N/A 13.000±0.00 N/A N/A N/A N/A N/A N/A N/A 140.783±0.00
ENSMUST00000156642 10.829±0.00 N/A N/A N/A 17.533±3.97 11.203±0.00 17.090±0.00 15.743±0.00 N/A N/A N/A 14.585±1.67 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004F3 CIL_0004F3_0002 CGP 11:50376990-50431125

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 ISS RNA binding
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0043484 ISS regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005551 hnrnph1l heterogeneous nuclear ribonucleoprotein H1, like protein_coding Danio_rerio
ENSDARG00000040881 hnrnph1 heterogeneous nuclear ribonucleoprotein H1 protein_coding Danio_rerio
ENSG00000169045 HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) protein_coding Homo_sapiens

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