C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein H1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069304 Hnrnph1-201 ENSMUSG00000007850 10090 + 11:50377719-50386527 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069304
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069304 20.968±9.94 10.233±2.31 47.940±2.84 112.228±3.08 11.201±1.99 9.365±0.72 17.044±0.39 14.405±4.33 41.510±39.03 21.779±8.70 27.291±3.15 11.822±1.60 59.674±1.84 27.895±4.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004F3 CIL_0004F3_0002 CGP 11:50376990-50431125

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 ISS RNA binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043484 ISS regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000059918 hnrnph1-201 protein_coding Danio_rerio 0 501
ENSDART00000015636 hnrnph1l-001 protein_coding Danio_rerio 0 460
ENSDART00000057651 HNRNPH3-201 protein_coding Danio_rerio 0 257
ENSDART00000113082 HNRNPH3-001 protein_coding Danio_rerio 0 257
ENST00000265866 HNRNPH3-012 protein_coding Homo_sapiens 0 248
ENST00000316594 HNRNPH2-001 protein_coding Homo_sapiens 0 1659
ENST00000329433 HNRNPH1-009 protein_coding Homo_sapiens 0 2152
ENST00000337970 HNRNPF-004 protein_coding Homo_sapiens 0 715
ENST00000354695 HNRNPH3-003 protein_coding Homo_sapiens 0 248
ENST00000356053 HNRNPF-005 protein_coding Homo_sapiens 0 715
ENST00000356731 HNRNPH1-001 protein_coding Homo_sapiens 0 2457
ENST00000357065 HNRNPF-001 protein_coding Homo_sapiens 0 715
ENST00000393432 HNRNPH1-006 protein_coding Homo_sapiens 0 2457
ENST00000396845 HNRNPH1P2-001 processed_pseudogene Homo_sapiens 0 604
ENST00000409170 RPL36A-HNRNPH2-002 protein_coding Homo_sapiens 9.80909e-45 183
ENST00000409338 RPL36A-HNRNPH2-001 protein_coding Homo_sapiens 0 355
ENST00000442819 HNRNPH1-005 protein_coding Homo_sapiens 0 2457
ENST00000443950 HNRNPF-201 protein_coding Homo_sapiens 0 715
ENST00000467249 HNRNPH3-001 processed_transcript Homo_sapiens 0 248
ENST00000469172 HNRNPH3-004 processed_transcript Homo_sapiens 0 193
ENST00000481819 HNRNPH3-006 processed_transcript Homo_sapiens 0 193
ENST00000486854 HNRNPH3-009 processed_transcript Homo_sapiens 0 248
ENST00000491200 HNRNPH3-005 processed_transcript Homo_sapiens 0 206
ENST00000502632 HNRNPH1-012 retained_intron Homo_sapiens 0 833
ENST00000502904 HNRNPH1-011 retained_intron Homo_sapiens 0 939
ENST00000503105 HNRNPH1-028 protein_coding Homo_sapiens 0 667
ENST00000503664 HNRNPH1-014 protein_coding Homo_sapiens 0 228
ENST00000504348 HNRNPH1-021 protein_coding Homo_sapiens 0 863
ENST00000504549 HNRNPH1-029 retained_intron Homo_sapiens 0 776
ENST00000504779 HNRNPH1-025 nonsense_mediated_decay Homo_sapiens 0 540
ENST00000505087 HNRNPH1-018 retained_intron Homo_sapiens 0 416
ENST00000505811 HNRNPH1-015 protein_coding Homo_sapiens 0 1079
ENST00000506721 HNRNPH1-022 protein_coding Homo_sapiens 0 667
ENST00000508103 HNRNPH1-027 protein_coding Homo_sapiens 0 667
ENST00000510411 HNRNPH1-008 protein_coding Homo_sapiens 0 1857
ENST00000510431 HNRNPH1-026 protein_coding Homo_sapiens 0 667
ENST00000510678 HNRNPH1-007 nonsense_mediated_decay Homo_sapiens 0 1051
ENST00000512273 HNRNPH1-017 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000513225 HNRNPH1-013 protein_coding Homo_sapiens 0 837
ENST00000513230 HNRNPH1-023 retained_intron Homo_sapiens 5e-30 134
ENST00000513972 HNRNPH1-019 retained_intron Homo_sapiens 0 667
ENST00000514332 HNRNPH1-003 retained_intron Homo_sapiens 0 2045
ENST00000514731 HNRNPH1-002 retained_intron Homo_sapiens 0 941
ENST00000515158 HNRNPH1-020 protein_coding Homo_sapiens 0 656
ENST00000515446 HNRNPH1-024 retained_intron Homo_sapiens 8e-30 134
ENST00000515481 HNRNPH1-010 retained_intron Homo_sapiens 0 833
ENST00000515565 HNRNPH1P3-001 processed_pseudogene Homo_sapiens 0 1375
ENST00000515714 HNRNPH1-016 protein_coding Homo_sapiens 0 416
ENST00000518548 HNRNPH1-039 processed_transcript Homo_sapiens 0 538
ENST00000519033 HNRNPH1-034 protein_coding Homo_sapiens 0 612
ENST00000519056 HNRNPH1-045 protein_coding Homo_sapiens 0 643
ENST00000519455 HNRNPH1-044 processed_transcript Homo_sapiens 0 257
ENST00000519707 HNRNPH1-047 retained_intron Homo_sapiens 0 667
ENST00000519943 HNRNPH1-038 retained_intron Homo_sapiens 0 538
ENST00000519958 HNRNPH1-050 nonsense_mediated_decay Homo_sapiens 0 492
ENST00000520415 HNRNPH1-036 retained_intron Homo_sapiens 0 555
ENST00000521116 HNRNPH1-041 protein_coding Homo_sapiens 0 582
ENST00000521173 HNRNPH1-049 protein_coding Homo_sapiens 0 1279
ENST00000521720 HNRNPH1-031 retained_intron Homo_sapiens 0 298
ENST00000521790 HNRNPH1-040 protein_coding Homo_sapiens 0 785
ENST00000522256 HNRNPH1-043 protein_coding Homo_sapiens 8e-26 121
ENST00000522958 HNRNPH1-037 retained_intron Homo_sapiens 0 743
ENST00000523136 HNRNPH1-032 protein_coding Homo_sapiens 6.00036e-42 172
ENST00000523137 HNRNPH1-046 protein_coding Homo_sapiens 0 429
ENST00000523449 HNRNPH1-033 protein_coding Homo_sapiens 0 750
ENST00000523921 HNRNPH1-035 protein_coding Homo_sapiens 0 896
ENST00000524179 HNRNPH1-030 retained_intron Homo_sapiens 0 217
ENST00000524180 HNRNPH1-048 processed_transcript Homo_sapiens 0 667
ENST00000544000 HNRNPF-202 protein_coding Homo_sapiens 0 715

Loading