C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily M, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009390 Trpm5-001 ENSMUSG00000009246 10090 - 7:143071789-143094642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENSMUST00000009390
Transcript ID Colon
ENSMUST00000009390 4.162±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BT CIL_0009BT_0002 VISTA 7:142749845-143351046
CIL_0008VI CIL_0008VI_0002 VISTA 7:142812060-143412968
CIL_0008FP CIL_0008FP_0002 VISTA 7:142853813-143455333
CIL_0008A3 CIL_0008A3_0002 VISTA 7:142895498-143499796

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005227 IDA calcium activated cation channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005267 IDA potassium channel activity
GO:0005272 IDA sodium channel activity
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0034220 IDA ion transmembrane transport
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IDA sodium ion transmembrane transport
GO:0050909 IEA sensory perception of taste
GO:0071805 IDA potassium ion transmembrane transport
GO:0098655 IDA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000155858 TRPM5-001 protein_coding Homo_sapiens 0 3088
ENST00000528453 TRPM5-004 protein_coding Homo_sapiens 0 3088
ENST00000533060 TRPM5-003 protein_coding Homo_sapiens 0 2983
ENST00000533881 TRPM5-002 protein_coding Homo_sapiens 0 3083

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