C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myogenic differentiation 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009471 Myod1 10090 + 7:46376474-46379092 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072514 Myod1-201 46376474-46379092 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000072514
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000072514 0.021±0.00 0.196±0.05 0.404±0.18 2.566±1.17 0.046±0.02 0.036±0.00 0.076±0.03 0.178±0.35 0.419±0.02 10.295±4.47 0.056±0.04 0.039±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000365 CIL_000365_0002 CGP 7:46240987-46379092
CIL_000448 CIL_000448_0002 CGP 7:46376474-46438375

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000790 IDA nuclear chromatin
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001047 IDA core promoter binding
GO:0001077 IC RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003705 TAS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007517 IDA muscle organ development
GO:0007518 IDA myoblast fate determination
GO:0007519 IDA skeletal muscle tissue development
GO:0008134 IPI transcription factor binding
GO:0009267 IDA cellular response to starvation
GO:0014904 IEA myotube cell development
GO:0014908 IMP myotube differentiation involved in skeletal muscle regeneration
GO:0019899 IPI enzyme binding
GO:0030016 IDA myofibril
GO:0031490 IDA chromatin DNA binding
GO:0031625 IPI ubiquitin protein ligase binding
GO:0035257 IEA nuclear hormone receptor binding
GO:0035914 NAS skeletal muscle cell differentiation
GO:0043415 IMP positive regulation of skeletal muscle tissue regeneration
GO:0043484 IEA regulation of RNA splicing
GO:0043503 IMP skeletal muscle fiber adaptation
GO:0043565 IDA sequence-specific DNA binding
GO:0043966 IDA histone H3 acetylation
GO:0043967 IDA histone H4 acetylation
GO:0045445 IDA myoblast differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IPI protein heterodimerization activity
GO:0048741 IMP skeletal muscle fiber development
GO:0051146 IMP striated muscle cell differentiation
GO:0051149 IEA positive regulation of muscle cell differentiation
GO:0055007 NAS cardiac muscle cell differentiation
GO:0071385 IDA cellular response to glucocorticoid stimulus
GO:0071392 IDA cellular response to estradiol stimulus
GO:0071453 IDA cellular response to oxygen levels
GO:1901741 IEA positive regulation of myoblast fusion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030110 myod1 myogenic differentiation 1 protein_coding Danio_rerio
ENSG00000129152 MYOD1 myogenic differentiation 1 protein_coding Homo_sapiens

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