C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin beta, non-erythrocytic 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000011751 Sptbn4 10090 - 7:27356383-27447686 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000011895 Sptbn4-001 27356383-27446599 protein_coding
  ENSMUST00000108362 Sptbn4-006 27356383-27394506 protein_coding
  ENSMUST00000108363 Sptbn4-004 27356383-27396553 protein_coding
  ENSMUST00000108364 Sptbn4-005 27356383-27396198 protein_coding
  ENSMUST00000137414 Sptbn4-003 27445954-27446517 processed_transcript
  ENSMUST00000138087 Sptbn4-007 27433136-27434369 processed_transcript
  ENSMUST00000152572 Sptbn4-002 27434201-27447686 protein_coding
  ENSMUST00000172269 Sptbn4-201 27356387-27447686 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENSMUST00000011895ENSMUST00000108363ENSMUST00000108364
Transcript ID Brain Testis
ENSMUST00000011895 10.219±4.35 6.147±4.13
ENSMUST00000108363 49.382±43.31 5.327±3.43
ENSMUST00000108364 N/A 4.271±2.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UW CIL_0006UW_0002 CGP 7:27356383-27466144

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002028 IMP regulation of sodium ion transport
GO:0003779 IDA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005912 IDA adherens junction
GO:0007409 IMP axonogenesis
GO:0007605 IMP sensory perception of sound
GO:0007628 IMP adult walking behavior
GO:0008091 IEA spectrin
GO:0009566 IMP fertilization
GO:0010459 IMP negative regulation of heart rate
GO:0016020 IEA membrane
GO:0016363 ISS nuclear matrix
GO:0016605 ISS PML body
GO:0019226 IMP transmission of nerve impulse
GO:0019902 IEA phosphatase binding
GO:0021952 IMP central nervous system projection neuron axonogenesis
GO:0022414 IMP reproductive process
GO:0030424 IDA axon
GO:0030506 ISS ankyrin binding
GO:0030507 IDA spectrin binding
GO:0030534 IMP adult behavior
GO:0033135 IDA regulation of peptidyl-serine phosphorylation
GO:0033268 IEA node of Ranvier
GO:0033270 IDA paranode region of axon
GO:0034613 IMP cellular protein localization
GO:0040018 IMP positive regulation of multicellular organism growth
GO:0043025 IDA neuronal cell body
GO:0043194 IDA axon initial segment
GO:0043203 IDA axon hillock
GO:0045162 IMP clustering of voltage-gated sodium channels
GO:0061337 IMP cardiac conduction
GO:0070062 IEA extracellular vesicular exosome
GO:0070852 IDA cell body fiber
GO:0090002 IMP establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087594 SPTBN4 (1 of 2) spectrin, beta, non-erythrocytic 4 protein_coding Danio_rerio
ENSDARG00000092624 SPTBN4 (2 of 2) spectrin, beta, non-erythrocytic 4 protein_coding Danio_rerio
ENSG00000160460 SPTBN4 spectrin, beta, non-erythrocytic 4 protein_coding Homo_sapiens

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