C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin beta, non-erythrocytic 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108363 Sptbn4-004 ENSMUSG00000011751 10090 - 7:27356383-27396553 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENSMUST00000108363
Transcript ID Brain Testis
ENSMUST00000108363 49.382±43.31 5.327±3.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UW CIL_0006UW_0002 CGP 7:27356383-27466144

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002028 IMP regulation of sodium ion transport
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0007409 IMP axonogenesis
GO:0007605 IMP sensory perception of sound
GO:0007628 IMP adult walking behavior
GO:0009566 IMP fertilization
GO:0010459 IMP negative regulation of heart rate
GO:0019226 IMP transmission of nerve impulse
GO:0021952 IMP central nervous system projection neuron axonogenesis
GO:0022414 IMP reproductive process
GO:0030424 IDA axon
GO:0030507 IDA spectrin binding
GO:0030534 IMP adult behavior
GO:0033135 IDA regulation of peptidyl-serine phosphorylation
GO:0033270 IDA paranode region of axon
GO:0034613 IMP cellular protein localization
GO:0040018 IMP positive regulation of multicellular organism growth
GO:0043025 IDA neuronal cell body
GO:0043194 IDA axon initial segment
GO:0043203 IDA axon hillock
GO:0045162 IMP clustering of voltage-gated sodium channels
GO:0061337 IMP cardiac conduction
GO:0070852 IDA cell body fiber

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338932 SPTBN4-201 protein_coding Homo_sapiens 0 5456
ENST00000352632 SPTBN4-001 protein_coding Homo_sapiens 0 5472
ENST00000392023 SPTBN4-004 protein_coding Homo_sapiens 0 2597
ENST00000392025 SPTBN4-202 protein_coding Homo_sapiens 0 5457
ENST00000593816 SPTBN4-009 processed_transcript Homo_sapiens 0 326
ENST00000593932 SPTBN4-006 retained_intron Homo_sapiens 0 529
ENST00000595535 SPTBN4-003 protein_coding Homo_sapiens 0 2547
ENST00000595690 SPTBN4-008 retained_intron Homo_sapiens 0 516
ENST00000596411 SPTBN4-007 retained_intron Homo_sapiens 0 965
ENST00000596900 SPTBN4-005 retained_intron Homo_sapiens 0 1559
ENST00000597389 SPTBN4-012 nonsense_mediated_decay Homo_sapiens 0 4759
ENST00000598249 SPTBN4-011 protein_coding Homo_sapiens 0 4854
ENST00000599926 SPTBN4-013 processed_transcript Homo_sapiens 0 514

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