C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin beta, non-erythrocytic 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000011895 Sptbn4-001 ENSMUSG00000011751 10090 - 7:27356383-27446599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENSMUST00000011895
Transcript ID Brain Testis
ENSMUST00000011895 10.219±4.35 6.147±4.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UW CIL_0006UW_0002 CGP 7:27356383-27466144

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002028 IMP regulation of sodium ion transport
GO:0003779 IDA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005737 IEA cytoplasm
GO:0007409 IMP axonogenesis
GO:0007605 IMP sensory perception of sound
GO:0007628 IMP adult walking behavior
GO:0008091 IEA spectrin
GO:0009566 IMP fertilization
GO:0010459 IMP negative regulation of heart rate
GO:0016020 IEA membrane
GO:0019226 IMP transmission of nerve impulse
GO:0019902 IEA phosphatase binding
GO:0021952 IMP central nervous system projection neuron axonogenesis
GO:0022414 IMP reproductive process
GO:0030424 IDA axon
GO:0030507 IDA spectrin binding
GO:0030534 IMP adult behavior
GO:0033135 IDA regulation of peptidyl-serine phosphorylation
GO:0033268 IEA node of Ranvier
GO:0033270 IDA paranode region of axon
GO:0034613 IMP cellular protein localization
GO:0040018 IMP positive regulation of multicellular organism growth
GO:0043025 IDA neuronal cell body
GO:0043194 IDA axon initial segment
GO:0043203 IDA axon hillock
GO:0045162 IMP clustering of voltage-gated sodium channels
GO:0061337 IMP cardiac conduction
GO:0070062 IEA extracellular vesicular exosome
GO:0070852 IDA cell body fiber

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000134537 SPTBN4 (2 of 2)-001 protein_coding Danio_rerio 0 676
ENST00000309996 SPTBN2-201 protein_coding Homo_sapiens 0 586
ENST00000322810 PLEC-001 protein_coding Homo_sapiens 0.0000005 64
ENST00000333896 SPTBN1-002 protein_coding Homo_sapiens 0 531
ENST00000338932 SPTBN4-201 protein_coding Homo_sapiens 0 10050
ENST00000345136 PLEC-004 protein_coding Homo_sapiens 0.000002 62
ENST00000352632 SPTBN4-001 protein_coding Homo_sapiens 0 10030
ENST00000354589 PLEC-005 protein_coding Homo_sapiens 0.000002 62
ENST00000354958 PLEC-008 protein_coding Homo_sapiens 0.000002 62
ENST00000356346 PLEC-009 protein_coding Homo_sapiens 0.000002 62
ENST00000356805 SPTBN1-001 protein_coding Homo_sapiens 0 551
ENST00000357649 PLEC-006 protein_coding Homo_sapiens 0.000002 62
ENST00000389980 SPTBN1-003 protein_coding Homo_sapiens 0 551
ENST00000392023 SPTBN4-004 protein_coding Homo_sapiens 0 2547
ENST00000392025 SPTBN4-202 protein_coding Homo_sapiens 0 10010
ENST00000398774 PLEC-007 protein_coding Homo_sapiens 0.000006 60
ENST00000436759 PLEC-002 protein_coding Homo_sapiens 0.0000001 66
ENST00000526416 PLEC-015 protein_coding Homo_sapiens 0.00000006 62
ENST00000527010 SPTBN2-004 protein_coding Homo_sapiens 9e-28 128
ENST00000527096 PLEC-003 protein_coding Homo_sapiens 0.0000001 66
ENST00000527816 PLEC-014 protein_coding Homo_sapiens 0.00000002 64
ENST00000528025 PLEC-010 protein_coding Homo_sapiens 0.00000002 66
ENST00000528131 PLEC-013 protein_coding Homo_sapiens 0.00000006 62
ENST00000529997 SPTBN2-003 protein_coding Homo_sapiens 0 586
ENST00000532346 PLEC-012 retained_intron Homo_sapiens 0.000000002 66
ENST00000533211 SPTBN2-001 protein_coding Homo_sapiens 0 586
ENST00000593816 SPTBN4-009 processed_transcript Homo_sapiens 0 326
ENST00000593932 SPTBN4-006 retained_intron Homo_sapiens 0 529
ENST00000595535 SPTBN4-003 protein_coding Homo_sapiens 0 7103
ENST00000595690 SPTBN4-008 retained_intron Homo_sapiens 0 516
ENST00000596411 SPTBN4-007 retained_intron Homo_sapiens 0 965
ENST00000596900 SPTBN4-005 retained_intron Homo_sapiens 0 1509
ENST00000597389 SPTBN4-012 nonsense_mediated_decay Homo_sapiens 0 4830
ENST00000598249 SPTBN4-011 protein_coding Homo_sapiens 0 9450
ENST00000598775 SPTBN4-014 retained_intron Homo_sapiens 0 656
ENST00000599926 SPTBN4-013 processed_transcript Homo_sapiens 0 514
ENST00000611817 SPTBN2-202 protein_coding Homo_sapiens 0 586
ENST00000615901 SPTBN1-201 protein_coding Homo_sapiens 0 551
ENST00000617502 SPTBN2-203 protein_coding Homo_sapiens 0 586

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