C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015478 Rnf5 10090 - 17:34601091-34603690 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000015622 Rnf5-001 34601091-34603690 protein_coding
  ENSMUST00000174045 Rnf5-002 34601782-34603661 retained_intron
  ENSMUST00000174475 Rnf5-003 34601314-34603376 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015622ENSMUST00000174475
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015622 24.263±3.33 37.431±4.02 41.023±9.91 33.070±18.09 20.542±2.08 35.950±6.13 18.129±1.29 62.345±8.03 45.545±10.93 20.299±1.60 7.875±1.92 20.251±6.19 15.436±9.77 17.806±0.75
ENSMUST00000174475 5.188±0.00 N/A N/A 12.863±4.17 6.607±2.58 9.228±0.55 N/A N/A N/A 5.338±0.00 N/A 7.143±1.47 4.398±0.00 4.349±0.23

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0008270 IEA zinc ion binding
GO:0009617 IMP response to bacterium
GO:0010507 IMP negative regulation of autophagy
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031648 IDA protein destabilization
GO:0044257 IEA cellular protein catabolic process
GO:0070534 ISS protein K63-linked ubiquitination
GO:0070936 IEA protein K48-linked ubiquitination
GO:0071712 ISS ER-associated misfolded protein catabolic process
GO:2000785 IMP regulation of autophagic vacuole assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075606 RNF5 ring finger protein 5, E3 ubiquitin protein ligase protein_coding Danio_rerio
ENSG00000204308 RNF5 ring finger protein 5, E3 ubiquitin protein ligase protein_coding Homo_sapiens

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