C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000015622 Rnf5-001 ENSMUSG00000015478 10090 - 17:34601091-34603690 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015622
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015622 24.263±3.33 37.431±4.02 41.023±9.91 33.070±18.09 20.542±2.08 35.950±6.13 18.129±1.29 62.345±8.03 45.545±10.93 20.299±1.60 7.875±1.92 20.251±6.19 15.436±9.77 17.806±0.75

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0008270 IEA zinc ion binding
GO:0009617 IMP response to bacterium
GO:0010507 IMP negative regulation of autophagy
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031648 IDA protein destabilization
GO:0044257 IEA cellular protein catabolic process
GO:0070534 ISS protein K63-linked ubiquitination
GO:0070936 IEA protein K48-linked ubiquitination
GO:0071712 ISS ER-associated misfolded protein catabolic process
GO:2000785 IMP regulation of autophagic vacuole assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375094 RNF5-001 protein_coding Homo_sapiens 0 856
ENST00000413786 RNF5-001 protein_coding Homo_sapiens 0 856
ENST00000432616 RNF5-001 protein_coding Homo_sapiens 0 856
ENST00000445885 RNF5-001 protein_coding Homo_sapiens 0 856
ENST00000449794 RNF5-001 protein_coding Homo_sapiens 0 856
ENST00000453473 RNF5-001 protein_coding Homo_sapiens 0 856
ENST00000456167 RNF5-001 protein_coding Homo_sapiens 0 856
ENST00000464353 RNF5-002 processed_transcript Homo_sapiens 0 418
ENST00000464945 RNF5-002 processed_transcript Homo_sapiens 0 418
ENST00000472060 RNF5-002 protein_coding Homo_sapiens 0 418
ENST00000485235 RNF5-002 processed_transcript Homo_sapiens 0 418
ENST00000487940 RNF5-002 processed_transcript Homo_sapiens 0 418
ENST00000488204 RNF5-002 processed_transcript Homo_sapiens 0 418
ENST00000496147 RNF5-002 processed_transcript Homo_sapiens 0 418
ENST00000524091 RNF5P1-001 processed_pseudogene Homo_sapiens 0 723

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