C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ligand of numb-protein X 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016520 Lnx2 10090 - 5:147016655-147076586 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016664 Lnx2-001 147016655-147076586 protein_coding
  ENSMUST00000123092 Lnx2-002 147018264-147019035 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016664ENSMUST00000123092
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016664 9.363±3.48 7.596±1.16 4.452±0.15 1.910±0.25 9.663±4.77 13.979±0.92 3.734±1.10 8.038±0.92 5.207±2.27 15.835±2.87 0.790±0.08 12.888±6.58 12.218±5.80 3.074±1.26
ENSMUST00000123092 N/A 10.205±2.30 N/A N/A 15.562±5.09 13.328±0.87 N/A N/A 9.298±1.77 18.850±4.00 N/A 20.706±3.53 N/A 2.329±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0002 VISTA 5:146855041-147456530
CIL_00082E CIL_00082E_0002 VISTA 5:146922660-147524221
CIL_0004M9 CIL_0004M9_0002 CGP 5:146951573-147076586
CIL_0007MT CIL_0007MT_0002 UCNEbase 5:146994099-147547626
CIL_0004M8 CIL_0004M8_0002 CGP 5:147016655-147111361

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0008270 IEA zinc ion binding
GO:0030165 IDA PDZ domain binding
GO:0051260 IDA protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029177 lnx2a ligand of numb-protein X 2a protein_coding Danio_rerio
ENSG00000139517 LNX2 ligand of numb-protein X 2 protein_coding Homo_sapiens

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