C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004M9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122033-ENSG00000139517 CGP 9606 13:27435643-27620404
GeneTranscriptPositionBiotype
ENSG00000122034 (GTF3A)
general transcription factor IIIA
ENST00000381140 (GTF3A-001) 27424544-27435688 protein_coding
ENST00000419181 (GTF3A-002) 27424662-27435688 nonsense_mediated_decay
ENST00000435781 (GTF3A-004) 27424638-27434169 nonsense_mediated_decay
ENST00000438571 (GTF3A-005) 27424676-27432745 nonsense_mediated_decay
ENST00000439403 (GTF3A-201) 27424544-27435686 protein_coding
ENST00000466776 (GTF3A-006) 27424766-27434150 processed_transcript
ENST00000470606 (GTF3A-003) 27425411-27435688 processed_transcript
ENST00000482655 (GTF3A-009) 27434657-27435823 retained_intron
ENST00000493903 (GTF3A-008) 27429213-27435034 processed_transcript
ENSG00000139517 (LNX2)
ligand of numb-protein X 2
ENST00000316334 (LNX2-001) 27545911-27620404 protein_coding
CIL_0004M9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000016510-ENSMUSG00000016520 CGP 10090 5:146951573-147076586
GeneTranscriptPositionBiotype
ENSMUSG00000016510 (Mtif3)
mitochondrial translational initiation factor 3
ENSMUST00000016654 (Mtif3-001) 146954520-146963787 protein_coding
ENSMUST00000066675 (Mtif3-002) 146951573-146963785 protein_coding
ENSMUST00000110564 (Mtif3-004) 146955367-146963749 protein_coding
ENSMUST00000110566 (Mtif3-003) 146955367-146963797 protein_coding
ENSMUST00000125217 (Mtif3-006) 146958937-146963743 protein_coding
ENSMUST00000140526 (Mtif3-005) 146958948-146963800 protein_coding
ENSMUSG00000016520 (Lnx2)
ligand of numb-protein X 2
ENSMUST00000016664 (Lnx2-001) 147016655-147076586 protein_coding
ENSMUST00000123092 (Lnx2-002) 147018264-147019035 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004M9_0001ENSG00000122034ENST00000381140ENST00000419181ENST00000435781ENST00000438571ENST00000439403ENST00000466776ENST00000470606ENST00000482655ENST00000493903ENSG00000139517ENST00000316334CIL_0004M9_0002ENSMUSG00000016510ENSMUST00000016654ENSMUST00000066675ENSMUST00000110564ENSMUST00000110566ENSMUST00000125217ENSMUST00000140526ENSMUSG00000016520ENSMUST00000016664ENSMUST00000123092
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004M9_0001ENSG00000122034ENST00000381140ENST00000419181ENST00000439403ENST00000466776ENSG00000139517ENST00000316334CIL_0004M9_0002ENSMUSG00000016510ENSMUST00000016654ENSMUST00000066675ENSMUST00000110566ENSMUSG00000016520ENSMUST00000016664ENSMUST00000123092
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122034 ENST00000381140 N/A N/A N/A N/A N/A N/A 3.873±0.00 N/A 3.324±0.00 N/A 7.950±0.00 23.694±6.70 27.980±0.00 N/A
ENST00000419181 N/A N/A N/A N/A N/A N/A N/A N/A 2.777±0.00 11.636±0.00 27.793±0.00 N/A 9.292±0.00 20.524±0.00
ENST00000435781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439403 48.243±0.00 97.436±0.00 1.414±0.00 23.544±11.89 43.829±36.05 25.894±21.43 39.133±33.46 29.792±14.64 67.188±0.00 21.619±17.25 54.397±0.00 89.422±71.36 21.068±6.00 72.289±0.00
ENST00000466776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 268.332±0.00 40.452±0.00 N/A
ENST00000470606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139517 ENST00000316334 1.465±0.00 1.187±0.00 N/A 1.042±0.47 1.560±0.00 2.350±0.00 1.984±0.00 3.007±0.65 3.301±1.82 3.913±0.91 1.822±0.92 5.774±2.97 1.254±0.09 6.814±1.48
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016510 ENSMUST00000016654 5.610±0.25 N/A 4.818±0.52 4.103±1.44 7.834±3.26 13.928±2.60 3.880±0.95 11.860±0.98 6.323±0.96 6.331±1.48 2.527±0.42 9.416±3.37 3.864±0.60 4.159±0.41
ENSMUST00000066675 1.186±0.20 N/A 1.178±0.05 1.398±0.00 0.869±0.02 2.248±0.00 0.801±0.22 2.128±0.12 1.100±0.17 0.977±0.01 1.075±0.21 1.987±0.00 1.378±0.36 0.417±0.09
ENSMUST00000110564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110566 N/A N/A 4.104±0.00 14.693±0.00 N/A N/A 2.660±0.13 N/A 4.484±0.46 N/A 4.739±0.94 16.084±10.16 14.366±8.33 7.926±8.24
ENSMUST00000125217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000016520 ENSMUST00000016664 9.363±3.48 7.596±1.16 4.452±0.15 1.910±0.25 9.663±4.77 13.979±0.92 3.734±1.10 8.038±0.92 5.207±2.27 15.835±2.87 0.790±0.08 12.888±6.58 12.218±5.80 3.074±1.26
ENSMUST00000123092 N/A 10.205±2.30 N/A N/A 15.562±5.09 13.328±0.87 N/A N/A 9.298±1.77 18.850±4.00 N/A 20.706±3.53 N/A 2.329±0.00

Loading