C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligand of numb-protein X 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016664 Lnx2-001 ENSMUSG00000016520 10090 - 5:147016655-147076586 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016664
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016664 9.363±3.48 7.596±1.16 4.452±0.15 1.910±0.25 9.663±4.77 13.979±0.92 3.734±1.10 8.038±0.92 5.207±2.27 15.835±2.87 0.790±0.08 12.888±6.58 12.218±5.80 3.074±1.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0002 VISTA 5:146855041-147456530
CIL_00082E CIL_00082E_0002 VISTA 5:146922660-147524221
CIL_0004M9 CIL_0004M9_0002 CGP 5:146951573-147076586
CIL_0007MT CIL_0007MT_0002 UCNEbase 5:146994099-147547626
CIL_0004M8 CIL_0004M8_0002 CGP 5:147016655-147111361

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0008270 IEA zinc ion binding
GO:0030165 IDA PDZ domain binding
GO:0051260 IDA protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316334 LNX2-001 protein_coding Homo_sapiens 0 1609

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