C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 12, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017765 Slc12a4 10090 - 8:105943590-105966115 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034370 Slc12a4-201 105943590-105966115 protein_coding
  ENSMUST00000116429 Slc12a4-001 105943590-105966044 protein_coding
  ENSMUST00000132231 Slc12a4-003 105953883-105964420 protein_coding
  ENSMUST00000141326 Slc12a4-004 105946691-105948173 retained_intron
  ENSMUST00000143381 Slc12a4-002 105960460-105966074 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034370ENSMUST00000116429
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034370 5.987±0.15 13.281±2.06 N/A 0.794±0.15 4.509±0.00 1.349±0.00 N/A 2.444±1.01 1.958±1.43 5.092±0.61 0.666±0.19 12.832±7.04 N/A 0.671±0.43
ENSMUST00000116429 15.563±9.33 14.906±6.45 16.611±1.89 3.822±0.80 8.742±4.59 6.386±1.38 11.803±2.66 7.555±2.58 4.212±2.06 18.469±5.69 4.134±0.86 13.029±4.65 7.620±4.85 0.994±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00003H CIL_00003H_0002 CGP 8:105939551-105966115
CIL_00003P CIL_00003P_0002 CGP 8:105943590-105979419

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005765 IEA lysosomal membrane
GO:0006813 IEA potassium ion transport
GO:0015379 IEA potassium:chloride symporter activity
GO:0016021 IEA integral component of membrane
GO:0019901 IEA protein kinase binding
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014378 slc12a4 solute carrier family 12 (potassium/chloride transporters), member 4 protein_coding Danio_rerio
ENSG00000124067 SLC12A4 solute carrier family 12 (potassium/chloride transporter), member 4 protein_coding Homo_sapiens

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