C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 12, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034370 Slc12a4-201 ENSMUSG00000017765 10090 - 8:105943590-105966115 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryTestisENSMUST00000034370
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000034370 5.987±0.15 13.281±2.06 0.794±0.15 4.509±0.00 1.349±0.00 2.444±1.01 1.958±1.43 5.092±0.61 0.666±0.19 12.832±7.04 0.671±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00003H CIL_00003H_0002 CGP 8:105939551-105966115
CIL_00003P CIL_00003P_0002 CGP 8:105943590-105979419

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005765 IEA lysosomal membrane
GO:0015379 IEA potassium:chloride symporter activity
GO:0016021 IEA integral component of membrane
GO:0019901 IEA protein kinase binding
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243964 SLC12A5-002 protein_coding Homo_sapiens 1e-33 150
ENST00000316341 SLC12A4-001 protein_coding Homo_sapiens 0 4156
ENST00000422611 SLC12A4-201 protein_coding Homo_sapiens 0 3884
ENST00000454036 SLC12A5-003 protein_coding Homo_sapiens 8e-34 150
ENST00000537830 SLC12A4-005 protein_coding Homo_sapiens 0 3919
ENST00000541864 SLC12A4-004 protein_coding Homo_sapiens 0 3917
ENST00000570616 SLC12A4-020 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000570802 SLC12A4-018 retained_intron Homo_sapiens 0 3768
ENST00000571299 SLC12A4-008 protein_coding Homo_sapiens 0 907
ENST00000572010 SLC12A4-003 processed_transcript Homo_sapiens 0 575
ENST00000572037 SLC12A4-007 protein_coding Homo_sapiens 0 3808
ENST00000572766 SLC12A4-011 retained_intron Homo_sapiens 0 230
ENST00000573023 SLC12A4-002 retained_intron Homo_sapiens 0 1458
ENST00000574665 SLC12A4-012 retained_intron Homo_sapiens 0 726
ENST00000575857 SLC12A4-014 nonsense_mediated_decay Homo_sapiens 0 544
ENST00000576377 SLC12A4-010 nonsense_mediated_decay Homo_sapiens 0 856
ENST00000576462 SLC12A4-009 retained_intron Homo_sapiens 0 540
ENST00000576513 SLC12A4-016 retained_intron Homo_sapiens 0 261
ENST00000576616 SLC12A4-017 protein_coding Homo_sapiens 0 3941
ENST00000616933 SLC12A5-203 protein_coding Homo_sapiens 1e-33 150

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