C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029208 Slc13a3-001 ENSMUSG00000018459 10090 - 2:165405028-165473230 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029208
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029208 0.318±0.16 0.547±0.20 0.070±0.04 0.548±0.37 0.398±0.09 0.376±0.07 0.095±0.02 66.631±21.87 3.795±2.87 0.386±0.15 0.045±0.00 0.275±0.14 3.272±2.97 0.090±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004D2 CIL_0004D2_0002 CGP 2:165393760-165473230
CIL_0004D3 CIL_0004D3_0002 CGP 2:165405028-165493324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006835 IDA dicarboxylic acid transport
GO:0015362 IDA high-affinity sodium:dicarboxylate symporter activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000279027 SLC13A3-001 protein_coding Homo_sapiens 0 1964
ENST00000290317 SLC13A3-201 protein_coding Homo_sapiens 0 1838
ENST00000372121 SLC13A3-010 protein_coding Homo_sapiens 0 496
ENST00000413164 SLC13A3-009 protein_coding Homo_sapiens 0 1050
ENST00000417157 SLC13A3-002 protein_coding Homo_sapiens 0 503
ENST00000420568 SLC13A3-003 protein_coding Homo_sapiens 0 496
ENST00000450298 SLC13A3-004 protein_coding Homo_sapiens 0 654
ENST00000468915 SLC13A3-006 protein_coding Homo_sapiens 0 1319
ENST00000472148 SLC13A3-007 protein_coding Homo_sapiens 0 894
ENST00000495082 SLC13A3-008 protein_coding Homo_sapiens 0 1810

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