C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox B1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018973 Hoxb1 10090 + 11:96365752-96368256 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019117 Hoxb1-001 96365752-96368256 protein_coding
  ENSMUST00000123805 Hoxb1-002 96366258-96367221 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverOvaryPlacentaTestisENSMUST00000019117ENSMUST00000123805
Transcript ID Bladder Brain Liver Ovary Placenta Testis
ENSMUST00000019117 0.031±0.00 0.009±0.01 0.013±0.01 0.018±0.00 0.012±0.00 0.023±0.01
ENSMUST00000123805 0.032±0.00 0.012±0.00 0.011±0.00 0.058±0.03 0.012±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009653 IGI anatomical structure morphogenesis
GO:0009952 IGI anterior/posterior pattern specification
GO:0019904 IEA protein domain specific binding
GO:0021546 IDA rhombomere development
GO:0021570 IGI rhombomere 4 development
GO:0021571 IGI rhombomere 5 development
GO:0021612 IMP facial nerve structural organization
GO:0021754 IMP facial nucleus development
GO:0043565 IGI sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048646 IGI anatomical structure formation involved in morphogenesis
GO:0048704 IGI embryonic skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000120094 HOXB1 homeobox B1 protein_coding Homo_sapiens

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