C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019117 Hoxb1-001 ENSMUSG00000018973 10090 + 11:96365752-96368256 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverOvaryPlacentaTestisENSMUST00000019117
Transcript ID Bladder Brain Liver Ovary Placenta Testis
ENSMUST00000019117 0.031±0.00 0.009±0.01 0.013±0.01 0.018±0.00 0.012±0.00 0.023±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009653 IGI anatomical structure morphogenesis
GO:0009952 IGI anterior/posterior pattern specification
GO:0019904 IEA protein domain specific binding
GO:0021546 IDA rhombomere development
GO:0021570 IGI rhombomere 4 development
GO:0021571 IGI rhombomere 5 development
GO:0021612 IMP facial nerve structural organization
GO:0021754 IMP facial nucleus development
GO:0043565 IGI sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048646 IGI anatomical structure formation involved in morphogenesis
GO:0048704 IGI embryonic skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000057730 dbx2-201 protein_coding Danio_rerio 0.00000002 66
ENSDART00000040368 mnx2b-001 protein_coding Danio_rerio 0.00000006 64
ENSDART00000114035 mnx2b-002 protein_coding Danio_rerio 0.00000006 64
ENSDART00000136282 atic-005 processed_transcript Danio_rerio 0.0000002 62
ENSDART00000139261 atic-003 processed_transcript Danio_rerio 0.0000002 62
ENSDART00000137670 atic-002 processed_transcript Danio_rerio 0.0000002 62
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 0.0000002 62
ENST00000239174 HOXB1-001 protein_coding Homo_sapiens 0 957
ENST00000249440 HOXD3-001 protein_coding Homo_sapiens 0.000000000002 79
ENST00000311626 HOXB3-007 protein_coding Homo_sapiens 0.00000000000006 84
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 1e-16 94
ENST00000410016 HOXD3-004 protein_coding Homo_sapiens 0.000000000003 79
ENST00000422806 NKX1-1-001 protein_coding Homo_sapiens 0.00002 55
ENST00000460160 HOXB3-006 protein_coding Homo_sapiens 0.00000000000003 84
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 0.000000000004 79
ENST00000470495 HOXB3-001 protein_coding Homo_sapiens 0.0000000000001 84
ENST00000472863 HOXB3-003 protein_coding Homo_sapiens 0.00000000000004 84
ENST00000476342 HOXB3-004 protein_coding Homo_sapiens 0.00000000000003 84
ENST00000489475 HOXB3-005 protein_coding Homo_sapiens 0.00000000000004 84
ENST00000490677 HOXB3-008 protein_coding Homo_sapiens 0.00000000000003 84
ENST00000498678 HOXB3-002 protein_coding Homo_sapiens 0.00000000000005 84
ENST00000577092 HOXB1-002 protein_coding Homo_sapiens 0 520

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