C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TRAF3 interacting protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019842 Traf3ip2 10090 + 10:39612934-39655307 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019987 Traf3ip2-001 39612934-39655307 protein_coding
  ENSMUST00000129693 Traf3ip2-002 39641134-39645758 retained_intron
  ENSMUST00000131629 Traf3ip2-004 39646123-39650920 processed_transcript
  ENSMUST00000155945 Traf3ip2-005 39650555-39654825 retained_intron
  ENSMUST00000156016 Traf3ip2-003 39646714-39654823 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019987ENSMUST00000156016
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019987 10.361±4.76 10.912±3.42 19.441±1.39 10.476±6.11 12.958±7.19 2.036±0.44 3.672±1.08 1.207±0.47 8.234±2.61 1.666±0.18 9.255±4.80 8.001±2.29 1.422±0.00
ENSMUST00000156016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.139±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000954 CIL_000954_0002 VISTA 10:39357714-39964005

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001783 IMP B cell apoptotic process
GO:0005515 IPI protein binding
GO:0006959 IMP humoral immune response
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0048305 IMP immunoglobulin secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087515 TRAF3IP2 (1 of 3) TRAF3 interacting protein 2 protein_coding Danio_rerio
ENSG00000056972 TRAF3IP2 TRAF3 interacting protein 2 protein_coding Homo_sapiens

Loading