C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TRAF3 interacting protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000056972 TRAF3IP2 9606 - 6:111556454-111606278 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000340026 TRAF3IP2-001 111558940-111606278 protein_coding
  ENST00000359831 TRAF3IP2-005 111558940-111605871 protein_coding
  ENST00000368730 TRAF3IP2-007 111559237-111567279 processed_transcript
  ENST00000368731 TRAF3IP2-006 111558961-111573986 processed_transcript
  ENST00000368734 TRAF3IP2-008 111559019-111567121 processed_transcript
  ENST00000368735 TRAF3IP2-002 111558986-111567360 protein_coding
  ENST00000368761 TRAF3IP2-004 111556454-111606246 protein_coding
  ENST00000392556 TRAF3IP2-201 111558942-111601214 protein_coding
  ENST00000464903 TRAF3IP2-003 111563025-111567276 processed_transcript
  ENST00000492671 TRAF3IP2-009 111558945-111566500 processed_transcript
  ENST00000528599 TRAF3IP2-011 111572717-111605962 retained_intron
  ENST00000532708 TRAF3IP2-010 111567253-111605870 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340026ENST00000359831ENST00000368730ENST00000368731ENST00000368734ENST00000368761ENST00000392556ENST00000464903ENST00000528599
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340026 N/A N/A N/A N/A 1.642±0.00 N/A 0.191±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000359831 14.697±0.00 3.294±0.00 N/A 3.964±0.00 2.259±0.00 5.277±0.00 0.614±0.47 1.691±0.00 1.028±0.18 8.411±0.00 1.824±0.00 4.672±0.00 3.115±0.30 2.203±0.00
ENST00000368730 N/A N/A N/A N/A 4.575±0.00 6.878±0.00 N/A N/A N/A N/A 1.218±0.00 N/A N/A N/A
ENST00000368731 N/A N/A 0.667±0.00 2.533±0.00 2.571±0.00 N/A N/A 0.393±0.00 N/A N/A N/A 4.561±0.00 N/A N/A
ENST00000368734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.941±0.00
ENST00000368761 N/A 0.780±0.00 N/A N/A N/A 0.606±0.00 0.310±0.00 0.443±0.00 0.143±0.00 N/A 0.595±0.00 0.715±0.00 N/A N/A
ENST00000392556 9.308±0.00 3.638±0.00 N/A 3.384±0.00 2.571±1.24 2.674±0.06 1.481±0.00 3.846±0.00 0.976±0.43 5.546±3.27 3.689±0.00 9.180±7.04 9.299±0.82 1.445±0.70
ENST00000464903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 54.777±0.00 29.406±0.00 N/A
ENST00000528599 N/A N/A N/A N/A N/A N/A N/A 0.782±0.00 N/A N/A 0.298±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000954 CIL_000954_0001 VISTA 6:111250485-111855465
CIL_0001OP CIL_0001OP_0002 CGP 6:111299028-111606278

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001783 IEA B cell apoptotic process
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0006959 IEA humoral immune response
GO:0007165 IEA signal transduction
GO:0035556 NAS intracellular signal transduction
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0048305 IEA immunoglobulin secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087515 TRAF3IP2 (1 of 3) TRAF3 interacting protein 2 protein_coding Danio_rerio
ENSMUSG00000019842 Traf3ip2 TRAF3 interacting protein 2 protein_coding Mus_musculus

Loading