C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRAF3 interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019987 Traf3ip2-001 ENSMUSG00000019842 10090 + 10:39612934-39655307 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019987
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019987 10.361±4.76 10.912±3.42 19.441±1.39 10.476±6.11 12.958±7.19 2.036±0.44 3.672±1.08 1.207±0.47 8.234±2.61 1.666±0.18 9.255±4.80 8.001±2.29 1.422±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000954 CIL_000954_0002 VISTA 10:39357714-39964005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001783 IMP B cell apoptotic process
GO:0005515 IPI protein binding
GO:0006959 IMP humoral immune response
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0048305 IMP immunoglobulin secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340026 TRAF3IP2-001 protein_coding Homo_sapiens 0 1480
ENST00000359831 TRAF3IP2-005 protein_coding Homo_sapiens 0 1459
ENST00000368730 TRAF3IP2-007 processed_transcript Homo_sapiens 0 529
ENST00000368731 TRAF3IP2-006 processed_transcript Homo_sapiens 0 754
ENST00000368734 TRAF3IP2-008 processed_transcript Homo_sapiens 0 529
ENST00000368735 TRAF3IP2-002 protein_coding Homo_sapiens 0 529
ENST00000368761 TRAF3IP2-004 protein_coding Homo_sapiens 0 1480
ENST00000392556 TRAF3IP2-201 protein_coding Homo_sapiens 0 1480
ENST00000464903 TRAF3IP2-003 processed_transcript Homo_sapiens 0 224
ENST00000492671 TRAF3IP2-009 processed_transcript Homo_sapiens 7e-18 95
ENST00000532708 TRAF3IP2-010 retained_intron Homo_sapiens 0 952

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