C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020018 Snrpf 10090 - 10:93583029-93589706 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020203 Snrpf-001 93583029-93589706 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020203
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020203 23.769±10.82 46.730±7.80 32.100±10.35 32.865±20.18 30.957±17.06 27.437±4.23 12.220±3.61 23.238±1.99 52.416±46.40 26.528±6.83 12.882±1.39 84.508±40.60 46.513±22.13 48.934±0.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0005683 ISS U7 snRNP
GO:0005685 ISS U1 snRNP
GO:0005687 ISS U4 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0005829 ISS cytosol
GO:0008380 IEA RNA splicing
GO:0030532 IEA small nuclear ribonucleoprotein complex
GO:0034709 ISS methylosome
GO:0034715 ISS pICln-Sm protein complex
GO:0034719 ISS SMN-Sm protein complex
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036570 snrpf small nuclear ribonucleoprotein polypeptide F protein_coding Danio_rerio
ENSG00000139343 SNRPF small nuclear ribonucleoprotein polypeptide F protein_coding Homo_sapiens

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