C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020203 Snrpf-001 ENSMUSG00000020018 10090 - 10:93583029-93589706 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020203
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020203 23.769±10.82 46.730±7.80 32.100±10.35 32.865±20.18 30.957±17.06 27.437±4.23 12.220±3.61 23.238±1.99 52.416±46.40 26.528±6.83 12.882±1.39 84.508±40.60 46.513±22.13 48.934±0.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0005683 ISS U7 snRNP
GO:0005685 ISS U1 snRNP
GO:0005687 ISS U4 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0005829 ISS cytosol
GO:0008380 IEA RNA splicing
GO:0030532 IEA small nuclear ribonucleoprotein complex
GO:0034709 ISS methylosome
GO:0034715 ISS pICln-Sm protein complex
GO:0034719 ISS SMN-Sm protein complex
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000053129 snrpf-201 protein_coding Danio_rerio 0 230
ENST00000266735 SNRPF-001 protein_coding Homo_sapiens 0 409
ENST00000414761 SNRPFP1-001 processed_pseudogene Homo_sapiens 0 272
ENST00000440710 SNRPFP2-001 processed_pseudogene Homo_sapiens 0 217
ENST00000549580 SNRPF-005 retained_intron Homo_sapiens 0 224
ENST00000551316 SNRPF-002 retained_intron Homo_sapiens 6.02558e-44 182
ENST00000552085 SNRPF-004 protein_coding Homo_sapiens 6.02558e-44 182
ENST00000553192 SNRPF-003 protein_coding Homo_sapiens 4.06377e-44 182

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