C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139343 SNRPF 9606 + 12:95858928-95903828 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000266735 SNRPF-001 95858928-95867053 protein_coding
  ENST00000549580 SNRPF-005 95865079-95866451 retained_intron
  ENST00000551316 SNRPF-002 95858964-95861841 retained_intron
  ENST00000552085 SNRPF-004 95858969-95903828 protein_coding
  ENST00000553192 SNRPF-003 95858965-95880001 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000266735ENST00000549580ENST00000551316ENST00000553192
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000266735 6.630±0.00 9.218±0.00 0.873±0.00 4.503±0.01 3.037±1.09 3.768±0.59 2.316±1.14 4.224±0.56 5.336±1.36 3.199±1.50 1.388±0.35 34.259±41.17 26.142±19.61 23.657±14.63
ENST00000549580 N/A 3.135±0.00 N/A 1.889±0.00 N/A N/A N/A 1.789±0.00 N/A N/A N/A N/A N/A N/A
ENST00000551316 N/A N/A N/A N/A 1.340±0.00 N/A 0.298±0.00 2.477±0.00 0.755±0.00 N/A N/A 1.346±0.00 N/A N/A
ENST00000553192 8.369±0.00 14.740±0.00 N/A 3.190±0.00 8.425±0.00 9.557±0.00 N/A 6.228±0.00 6.154±0.00 5.136±0.00 1.427±0.00 N/A N/A 11.002±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Y3 CIL_0000Y3_0002 CGP 12:95657807-95903828

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003723 IMP RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005683 IDA U7 snRNP
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005829 IDA cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006396 IEA RNA processing
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 IMP RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0030532 IDA small nuclear ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034715 IDA pICln-Sm protein complex
GO:0034719 IDA SMN-Sm protein complex
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036570 snrpf small nuclear ribonucleoprotein polypeptide F protein_coding Danio_rerio
ENSMUSG00000020018 Snrpf small nuclear ribonucleoprotein polypeptide F protein_coding Mus_musculus

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