C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin beta, non-erythrocytic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000011877 Sptbn1-201 ENSMUSG00000020315 10090 - 11:30099396-30219772 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000011877
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000011877 65.396±23.24 53.900±1.73 33.874±13.90 23.493±8.42 18.183±2.86 37.938±0.35 43.550±3.65 3.586±1.42 116.196±10.41 9.020±1.27 29.712±24.56 28.230±7.27 4.487±0.88

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005543 IEA phospholipid binding
GO:0005634 IDA nucleus
GO:0005886 IDA plasma membrane
GO:0007182 IDA common-partner SMAD protein phosphorylation
GO:0007184 IDA SMAD protein import into nucleus
GO:0008091 IEA spectrin
GO:0016020 IDA membrane
GO:0030673 IDA axolemma
GO:0030863 IDA cortical cytoskeleton
GO:0031430 IDA M band
GO:0032437 IDA cuticular plate
GO:0051693 IEA actin filament capping
GO:0072661 IMP protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000098492 protein_coding Danio_rerio 0 1386
ENSDART00000049651 CABZ01070007.1-201 protein_coding Danio_rerio 0 848
ENST00000333896 SPTBN1-002 protein_coding Homo_sapiens 0 8242
ENST00000356805 SPTBN1-001 protein_coding Homo_sapiens 0 9428
ENST00000389980 SPTBN1-003 protein_coding Homo_sapiens 0 2870
ENST00000467371 SPTBN1-005 retained_intron Homo_sapiens 0 1214
ENST00000496323 SPTBN1-004 retained_intron Homo_sapiens 0 1099
ENST00000602898 SPTBN1-006 retained_intron Homo_sapiens 0 274
ENST00000615901 SPTBN1-201 protein_coding Homo_sapiens 0 9389

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