C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: jade family PHD finger 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020387 Jade2 10090 - 11:51813455-51857653 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020655 Jade2-001 51813455-51857653 protein_coding
  ENSMUST00000109090 Jade2-002 51813455-51857653 protein_coding
  ENSMUST00000109091 Jade2-004 51813460-51857396 protein_coding
  ENSMUST00000151277 Jade2-003 51842301-51857125 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020655ENSMUST00000109090ENSMUST00000109091
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020655 2.193±0.56 2.960±0.84 2.381±0.04 0.961±0.91 6.385±3.97 2.957±0.99 0.466±0.07 2.433±0.42 0.541±0.38 9.963±4.17 0.310±0.09 4.692±2.38 0.145±0.02 0.398±0.10
ENSMUST00000109090 N/A 2.060±0.70 N/A N/A N/A N/A N/A N/A 0.383±0.00 N/A N/A 1.615±0.00 0.357±0.06 N/A
ENSMUST00000109091 1.297±0.00 2.492±1.09 0.697±0.00 8.485±0.00 2.732±1.52 1.102±0.23 0.685±0.33 1.189±0.29 0.446±0.28 3.862±1.02 0.511±0.07 2.369±1.02 0.205±0.15 0.769±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0002 VISTA 11:51640537-52246109

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000123 IEA histone acetyltransferase complex
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0043966 ISS histone H3 acetylation
GO:0043981 ISS histone H4-K5 acetylation
GO:0043982 ISS histone H4-K8 acetylation
GO:0043983 ISS histone H4-K12 acetylation
GO:0060395 IDA SMAD protein signal transduction
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053389 JADE2 jade family PHD finger 2 protein_coding Danio_rerio
ENSG00000043143 JADE2 jade family PHD finger 2 protein_coding Homo_sapiens

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