C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: voltage-dependent anion channel 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020402 Vdac1 10090 + 11:52360860-52389397 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020673 Vdac1-005 52374263-52388523 protein_coding
  ENSMUST00000102758 Vdac1-001 52360860-52389397 protein_coding
  ENSMUST00000125694 Vdac1-003 52361135-52388496 nonsense_mediated_decay
  ENSMUST00000153339 Vdac1-004 52387197-52388791 retained_intron
  ENSMUST00000157052 Vdac1-002 52374100-52376775 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020673ENSMUST00000102758ENSMUST00000125694ENSMUST00000153339
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020673 N/A N/A N/A 397.901±0.00 N/A 23.490±1.22 N/A N/A N/A N/A N/A 45.418±71.66 216.651±117.39 10.584±0.00
ENSMUST00000102758 67.286±11.10 40.375±1.80 86.671±0.86 57.382±16.58 74.275±51.54 47.851±2.98 242.834±11.68 143.174±13.29 52.018±10.03 27.728±6.15 597.182±20.15 25.533±14.50 68.605±51.52 5.765±2.72
ENSMUST00000125694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.850±0.00
ENSMUST00000153339 N/A N/A N/A 122.179±0.00 N/A N/A N/A N/A N/A N/A N/A 67.196±0.00 169.736±68.99 4.203±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001662 IMP behavioral fear response
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005741 ISO mitochondrial outer membrane
GO:0005743 IDA mitochondrial inner membrane
GO:0005886 IEA plasma membrane
GO:0006820 IEA anion transport
GO:0006915 IEA apoptotic process
GO:0007268 IMP synaptic transmission
GO:0007270 IMP neuron-neuron synaptic transmission
GO:0007612 IMP learning
GO:0008308 IDA voltage-gated anion channel activity
GO:0015288 IEA porin activity
GO:0016020 IDA membrane
GO:0019901 IEA protein kinase binding
GO:0030855 IEA epithelial cell differentiation
GO:0042645 IEA mitochondrial nucleoid
GO:0044070 IEA regulation of anion transport
GO:0046930 IEA pore complex
GO:0055085 IEA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045132 vdac1 voltage-dependent anion channel 1 protein_coding Danio_rerio
ENSG00000213585 VDAC1 voltage-dependent anion channel 1 protein_coding Homo_sapiens

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