C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: voltage-dependent anion channel 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102758 Vdac1-001 ENSMUSG00000020402 10090 + 11:52360860-52389397 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102758
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102758 67.286±11.10 40.375±1.80 86.671±0.86 57.382±16.58 74.275±51.54 47.851±2.98 242.834±11.68 143.174±13.29 52.018±10.03 27.728±6.15 597.182±20.15 25.533±14.50 68.605±51.52 5.765±2.72

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001662 IMP behavioral fear response
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005741 ISO mitochondrial outer membrane
GO:0005743 IDA mitochondrial inner membrane
GO:0005886 IEA plasma membrane
GO:0006820 IEA anion transport
GO:0006915 IEA apoptotic process
GO:0007268 IMP synaptic transmission
GO:0007270 IMP neuron-neuron synaptic transmission
GO:0007612 IMP learning
GO:0008308 IDA voltage-gated anion channel activity
GO:0015288 IEA porin activity
GO:0016020 IDA membrane
GO:0019901 IEA protein kinase binding
GO:0030855 IEA epithelial cell differentiation
GO:0042645 IEA mitochondrial nucleoid
GO:0044070 IEA regulation of anion transport
GO:0046930 IEA pore complex
GO:0055085 IEA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265333 VDAC1-002 protein_coding Homo_sapiens 0 1310
ENST00000395044 VDAC1-003 protein_coding Homo_sapiens 0 1356
ENST00000395047 VDAC1-001 protein_coding Homo_sapiens 0 1345
ENST00000406025 VDAC1P8-001 transcribed_processed_pseudogene Homo_sapiens 0 865
ENST00000412766 VDAC1P9-001 processed_pseudogene Homo_sapiens 0 381
ENST00000416715 VDAC1P10-001 processed_pseudogene Homo_sapiens 0 420
ENST00000423609 VDAC1P2-001 processed_pseudogene Homo_sapiens 0 992
ENST00000425992 VDAC1-004 protein_coding Homo_sapiens 0 682
ENST00000430062 VDAC1P6-001 processed_pseudogene Homo_sapiens 0 939
ENST00000434069 VDAC1P3-001 processed_pseudogene Homo_sapiens 0 972
ENST00000439229 VDAC1P1-001 processed_pseudogene Homo_sapiens 0 1009
ENST00000450197 VDAC1P4-001 processed_pseudogene Homo_sapiens 0 852
ENST00000451853 VDAC1P12-001 processed_pseudogene Homo_sapiens 0 483
ENST00000458323 VDAC1P11-001 processed_pseudogene Homo_sapiens 0 953
ENST00000462417 VDAC1P7-001 processed_pseudogene Homo_sapiens 0 881
ENST00000466080 VDAC1-005 processed_transcript Homo_sapiens 0 409
ENST00000489906 VDAC1-007 retained_intron Homo_sapiens 0 490
ENST00000492324 VDAC1-006 processed_transcript Homo_sapiens 0 780
ENST00000589563 VDAC1P8-003 processed_transcript Homo_sapiens 0 379
ENST00000603132 VDAC1P5-001 processed_pseudogene Homo_sapiens 0 889
ENST00000610068 VDAC1P8-009 processed_transcript Homo_sapiens 0 599

Loading