C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: voltage-dependent anion channel 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213585 VDAC1 9606 - 5:133971915-134005133 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265333 VDAC1-002 133971915-134005133 protein_coding
  ENST00000395044 VDAC1-003 133971915-134004742 protein_coding
  ENST00000395047 VDAC1-001 133971952-134004842 protein_coding
  ENST00000425992 VDAC1-004 133980729-134004635 protein_coding
  ENST00000466080 VDAC1-005 133988788-134004692 processed_transcript
  ENST00000489906 VDAC1-007 133972726-133976369 retained_intron
  ENST00000492324 VDAC1-006 133972726-133981017 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395044ENST00000395047ENST00000425992ENST00000492324
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395044 22.904±0.00 21.347±0.00 9.012±0.00 54.902±1.34 25.017±15.11 23.944±9.03 72.340±48.47 48.448±22.12 24.515±11.89 21.938±6.19 76.497±61.63 21.819±8.95 24.697±10.12 13.406±0.00
ENST00000395047 9.157±0.00 N/A 8.906±0.00 12.067±0.47 7.054±0.00 12.071±6.26 31.138±8.12 8.853±3.93 10.308±4.78 11.094±0.00 57.775±21.76 24.517±7.35 32.380±3.88 9.849±1.17
ENST00000425992 N/A N/A N/A N/A 10.367±0.00 N/A N/A N/A N/A N/A 58.625±0.00 58.119±0.00 45.683±0.00 11.151±0.00
ENST00000492324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 85.148±0.00 65.292±0.00 20.900±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GL CIL_0000GL_0002 CGP 5:133955502-134005133

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001662 IEA behavioral fear response
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0005743 IEA mitochondrial inner membrane
GO:0005886 IEA plasma membrane
GO:0006820 IEA anion transport
GO:0006915 TAS apoptotic process
GO:0007268 IEA synaptic transmission
GO:0007270 IEA neuron-neuron synaptic transmission
GO:0007612 IEA learning
GO:0008308 ISS voltage-gated anion channel activity
GO:0015288 IEA porin activity
GO:0016020 ISS membrane
GO:0016032 IEA viral process
GO:0019901 IPI protein kinase binding
GO:0030855 IEP epithelial cell differentiation
GO:0042645 IDA mitochondrial nucleoid
GO:0044070 IEA regulation of anion transport
GO:0046930 TAS pore complex
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045132 vdac1 voltage-dependent anion channel 1 protein_coding Danio_rerio
ENSMUSG00000020402 Vdac1 voltage-dependent anion channel 1 protein_coding Mus_musculus

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