C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, delta 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020513 Tubd1 10090 + 11:86544991-86567360 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020821 Tubd1-002 86544991-86567360 protein_coding
  ENSMUST00000069503 Tubd1-003 86544991-86567360 protein_coding
  ENSMUST00000108030 Tubd1-001 86544991-86567360 protein_coding
  ENSMUST00000164931 Tubd1-004 86555195-86567360 protein_coding
  ENSMUST00000167178 Tubd1-201 86544991-86567359 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020821ENSMUST00000069503ENSMUST00000108030ENSMUST00000164931ENSMUST00000167178
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020821 N/A N/A N/A N/A N/A 0.277±0.00 N/A N/A 0.235±0.00 N/A N/A N/A N/A 1.847±0.43
ENSMUST00000069503 2.125±0.37 1.253±0.26 2.675±0.35 1.736±0.46 1.849±0.57 1.051±0.40 1.197±0.21 1.091±0.21 2.460±2.09 1.759±0.26 2.371±0.15 1.658±0.62 3.405±0.86 0.468±0.00
ENSMUST00000108030 1.479±0.70 0.725±0.16 0.418±0.00 0.366±0.14 1.310±0.67 0.207±0.08 0.860±0.15 0.468±0.24 0.721±0.26 0.637±0.08 1.358±0.61 0.530±0.12 1.008±0.39 6.674±2.87
ENSMUST00000164931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.065±0.00 N/A N/A
ENSMUST00000167178 N/A N/A N/A N/A N/A N/A N/A N/A 0.207±0.06 N/A N/A N/A 0.638±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0030154 IEA cell differentiation
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058219 tubd1 tubulin, delta 1 protein_coding Danio_rerio
ENSG00000108423 TUBD1 tubulin, delta 1 protein_coding Homo_sapiens

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