C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, delta 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108423 TUBD1 9606 - 17:59859482-59892945 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325752 TUBD1-201 59859482-59892945 protein_coding
  ENST00000340993 TUBD1-002 59860013-59892920 protein_coding
  ENST00000346141 TUBD1-005 59859490-59892715 protein_coding
  ENST00000376094 TUBD1-003 59860225-59891003 protein_coding
  ENST00000394239 TUBD1-001 59860034-59892858 protein_coding
  ENST00000539018 TUBD1-006 59860317-59892893 protein_coding
  ENST00000587476 TUBD1-011 59874539-59878762 retained_intron
  ENST00000588009 TUBD1-010 59863664-59881148 retained_intron
  ENST00000588706 TUBD1-013 59886505-59892943 processed_transcript
  ENST00000590498 TUBD1-008 59880938-59892935 protein_coding
  ENST00000591548 TUBD1-012 59860322-59892941 nonsense_mediated_decay
  ENST00000591611 TUBD1-014 59878301-59892899 processed_transcript
  ENST00000592145 TUBD1-007 59890884-59892935 protein_coding
  ENST00000592426 TUBD1-004 59860225-59891003 protein_coding
  ENST00000593110 TUBD1-009 59863783-59892893 nonsense_mediated_decay
  ENST00000613721 TUBD1-202 59859482-59892945 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325752ENST00000340993ENST00000346141ENST00000376094ENST00000394239ENST00000539018ENST00000587476ENST00000588706ENST00000590498ENST00000591611ENST00000592426ENST00000613721
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325752 N/A N/A N/A N/A 0.478±0.00 N/A N/A N/A N/A N/A N/A 2.219±0.94 N/A 1.809±0.00
ENST00000340993 N/A N/A N/A N/A 0.279±0.00 N/A 0.149±0.00 N/A 0.383±0.00 N/A N/A 1.261±0.88 0.842±0.00 1.681±0.00
ENST00000346141 N/A 0.363±0.00 N/A 0.429±0.04 0.674±0.00 0.290±0.00 0.778±0.00 0.638±0.11 N/A 0.722±0.41 0.857±0.00 1.162±0.08 0.580±0.07 N/A
ENST00000376094 0.691±0.00 0.505±0.00 0.580±0.00 N/A N/A N/A N/A N/A 0.798±0.00 1.092±0.00 1.391±0.00 0.849±0.00 N/A N/A
ENST00000394239 N/A N/A N/A N/A 0.699±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539018 N/A N/A N/A 0.724±0.00 1.099±0.00 N/A 0.531±0.13 N/A N/A N/A 0.606±0.00 1.560±0.00 N/A N/A
ENST00000587476 N/A 1.201±0.00 N/A N/A N/A 0.355±0.00 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000588706 N/A N/A N/A N/A N/A 0.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590498 N/A N/A N/A N/A N/A 0.857±0.00 N/A N/A N/A N/A N/A N/A N/A 3.005±0.00
ENST00000591611 N/A N/A N/A 0.649±0.00 N/A 0.998±0.00 N/A N/A N/A N/A N/A 1.759±0.00 N/A N/A
ENST00000592426 N/A N/A N/A 0.218±0.00 0.534±0.00 0.952±0.47 N/A N/A 0.637±0.00 1.355±0.00 N/A N/A N/A N/A
ENST00000613721 N/A N/A N/A N/A N/A N/A N/A 0.592±0.00 N/A N/A N/A 0.422±0.00 0.519±0.00 1.136±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441
CIL_000567 CIL_000567_0002 CGP 17:59707192-59892945
CIL_00056A CIL_00056A_0002 CGP 17:59859482-59950564

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005814 TAS centriole
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0030154 IEA cell differentiation
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058219 tubd1 tubulin, delta 1 protein_coding Danio_rerio
ENSMUSG00000020513 Tubd1 tubulin, delta 1 protein_coding Mus_musculus

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