C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, delta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069503 Tubd1-003 ENSMUSG00000020513 10090 + 11:86544991-86567360 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069503
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069503 2.125±0.37 1.253±0.26 2.675±0.35 1.736±0.46 1.849±0.57 1.051±0.40 1.197±0.21 1.091±0.21 2.460±2.09 1.759±0.26 2.371±0.15 1.658±0.62 3.405±0.86 0.468±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0030154 IEA cell differentiation
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325752 TUBD1-201 protein_coding Homo_sapiens 0 1369
ENST00000340993 TUBD1-002 protein_coding Homo_sapiens 0 832
ENST00000376094 TUBD1-003 protein_coding Homo_sapiens 0 819
ENST00000394239 TUBD1-001 protein_coding Homo_sapiens 0 1070
ENST00000539018 TUBD1-006 protein_coding Homo_sapiens 0 743
ENST00000587476 TUBD1-011 retained_intron Homo_sapiens 0 405
ENST00000590498 TUBD1-008 protein_coding Homo_sapiens 0 372
ENST00000591548 TUBD1-012 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000591611 TUBD1-014 processed_transcript Homo_sapiens 0 355
ENST00000592426 TUBD1-004 protein_coding Homo_sapiens 0 1358
ENST00000593110 TUBD1-009 nonsense_mediated_decay Homo_sapiens 3.00004e-41 172
ENST00000613721 TUBD1-202 protein_coding Homo_sapiens 0 830

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