C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UBX domain protein 2A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020634 Ubxn2a 10090 - 12:4879032-4907705 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020962 Ubxn2a-001 4879032-4907705 protein_coding
  ENSMUST00000141360 Ubxn2a-003 4880390-4907439 nonsense_mediated_decay
  ENSMUST00000142867 Ubxn2a-002 4879349-4907264 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020962ENSMUST00000141360ENSMUST00000142867
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020962 6.652±1.75 2.651±0.81 1.938±0.70 5.858±1.11 4.430±0.00 4.059±3.52 4.673±0.47 14.616±0.00 2.529±1.25 6.689±2.22 0.560±0.26
ENSMUST00000141360 N/A 32.380±0.00 N/A N/A N/A N/A N/A N/A 24.409±0.00 55.984±3.56 4.410±0.00
ENSMUST00000142867 N/A N/A 1.038±0.14 N/A 2.446±0.00 0.911±0.00 N/A N/A 2.053±0.39 N/A 0.233±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014I CIL_00014I_0002 CGP 12:4862440-4907705
CIL_00014J CIL_00014J_0002 CGP 12:4879032-5044047

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0005801 IDA cis-Golgi network
GO:0005829 IDA cytosol
GO:0010468 ISO regulation of gene expression
GO:0031396 IDA regulation of protein ubiquitination
GO:0033130 IPI acetylcholine receptor binding
GO:0042176 IDA regulation of protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087180 ubxn2a UBX domain protein 2A protein_coding Danio_rerio
ENSG00000173960 UBXN2A UBX domain protein 2A protein_coding Homo_sapiens

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