C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RecQ protein-like 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020752 Recql5 10090 - 11:115892595-115933477 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021097 Recql5-001 115892595-115933477 protein_coding
  ENSMUST00000131578 Recql5-007 115895415-115927386 nonsense_mediated_decay
  ENSMUST00000134208 Recql5-003 115914534-115933477 nonsense_mediated_decay
  ENSMUST00000136774 Recql5-005 115892595-115895136 retained_intron
  ENSMUST00000140174 Recql5-002 115892595-115933477 nonsense_mediated_decay
  ENSMUST00000144824 Recql5-004 115896265-115933477 retained_intron
  ENSMUST00000147172 Recql5-008 115896809-115907253 processed_transcript
  ENSMUST00000156776 Recql5-006 115925443-115927554 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000021097ENSMUST00000136774ENSMUST00000140174
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021097 4.630±0.51 4.914±0.54 7.834±0.56 6.224±1.22 4.381±0.76 1.638±0.15 3.413±0.91 5.445±0.58 1.964±0.28 7.616±1.41 5.114±1.25 9.499±1.40
ENSMUST00000136774 N/A 7.680±0.83 N/A N/A 5.592±0.85 2.274±0.00 2.415±0.17 N/A N/A N/A N/A N/A
ENSMUST00000140174 N/A N/A N/A N/A 1.234±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IO CIL_0007IO_0002 CGP 11:115892595-115933477

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000993 ISS RNA polymerase II core binding
GO:0003676 IEA nucleic acid binding
GO:0003678 ISS DNA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006260 ISS DNA replication
GO:0006281 ISS DNA repair
GO:0006310 IEA DNA recombination
GO:0007067 ISS mitotic nuclear division
GO:0008026 IEA ATP-dependent helicase activity
GO:0016591 IEA DNA-directed RNA polymerase II, holoenzyme
GO:0031965 IEA nuclear membrane
GO:0032508 ISS DNA duplex unwinding
GO:0034244 ISS negative regulation of transcription elongation from RNA polymerase II promoter
GO:0051304 ISS chromosome separation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059556 recql5l RecQ protein-like 5 like protein_coding Danio_rerio
ENSG00000108469 RECQL5 RecQ protein-like 5 protein_coding Homo_sapiens

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