C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RecQ protein-like 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108469 RECQL5 9606 - 17:75626845-75667189 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317905 RECQL5-001 75626854-75667189 protein_coding
  ENST00000340830 RECQL5-004 75650359-75667189 protein_coding
  ENST00000420326 RECQL5-020 75648865-75667189 protein_coding
  ENST00000423245 RECQL5-002 75626854-75667142 protein_coding
  ENST00000443199 RECQL5-007 75626845-75634223 processed_transcript
  ENST00000578201 RECQL5-005 75631457-75667088 protein_coding
  ENST00000578865 RECQL5-008 75626845-75628874 retained_intron
  ENST00000579265 RECQL5-017 75629561-75630234 retained_intron
  ENST00000579274 RECQL5-006 75652448-75658360 processed_transcript
  ENST00000579739 RECQL5-015 75638546-75639962 processed_transcript
  ENST00000580078 RECQL5-010 75651095-75662960 protein_coding
  ENST00000580707 RECQL5-014 75629318-75639940 protein_coding
  ENST00000581825 RECQL5-019 75626910-75629095 protein_coding
  ENST00000581827 RECQL5-013 75638762-75639973 retained_intron
  ENST00000582464 RECQL5-011 75631492-75660988 nonsense_mediated_decay
  ENST00000582548 RECQL5-018 75628397-75629442 protein_coding
  ENST00000583673 RECQL5-012 75631466-75639990 processed_transcript
  ENST00000584999 RECQL5-003 75650362-75667173 protein_coding
  ENST00000585205 RECQL5-016 75629775-75630634 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverPlacentaTestisENST00000317905ENST00000423245
Transcript ID Breast Kidney Liver Placenta Testis
ENST00000317905 8.270±0.00 N/A 4.588±0.00 7.853±1.74 14.801±5.55
ENST00000423245 N/A 1.503±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0007IO CIL_0007IO_0001 CGP 17:75626845-75667189

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000993 IDA RNA polymerase II core binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003678 NAS DNA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 NAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006259 NAS DNA metabolic process
GO:0006260 IMP DNA replication
GO:0006281 IMP DNA repair
GO:0006310 IEA DNA recombination
GO:0007067 IMP mitotic nuclear division
GO:0008026 IEA ATP-dependent helicase activity
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0016787 IEA hydrolase activity
GO:0031965 IDA nuclear membrane
GO:0032508 NAS DNA duplex unwinding
GO:0034244 IDA negative regulation of transcription elongation from RNA polymerase II promoter
GO:0051304 IMP chromosome separation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059556 recql5l RecQ protein-like 5 like protein_coding Danio_rerio
ENSMUSG00000020752 Recql5 RecQ protein-like 5 protein_coding Mus_musculus

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